Table 2 Significantly enriched gene pathways involving differentially expressed genes following cold stress treatment.
# | Pathway ID | Pathway | DEGs with pathway annotation | Q value |
|---|---|---|---|---|
0 vs 12 h | ||||
1 | ko00620 | Pyruvate metabolism | 35 (5.53%) | 3.47E-13 |
2 | ko00591 | Linoleic acid metabolism | 16 (2.53%) | 8.95E-11 |
3 | ko00710 | Carbon fixation in photosynthetic organisms | 26 (4.11%) | 8.95E-11 |
4 | ko00053 | Ascorbate and aldarate metabolism | 19 (3%) | 1.14E-07 |
5 | ko00910 | Nitrogen metabolism | 14 (2.21%) | 6.11E-04 |
6 | ko00592 | α-Linolenic acid metabolism | 13 (2.05%) | 8.20E-04 |
7 | ko00500 | Starch and sucrose metabolism | 30 (4.74%) | 2.29E-03 |
8 | ko01100 | Metabolic pathways | 167 (26.38%) | 4.81E-03 |
9 | ko00380 | Tryptophan metabolism | 8 (1.26%) | 1.28E-02 |
10 | ko00410 | β-Alanine metabolism | 9 (1.42%) | 3.26E-02 |
11 | ko00340 | Histidine metabolism | 10 (1.58%) | 4.12E-02 |
12 | ko00280 | Valine, leucine and isoleucine degradation | 12 (1.9%) | 4.12E-02 |
0 vs 24 h | ||||
1 | ko00620 | Pyruvate metabolism | 36 (6.24%) | 3.14E-15 |
2 | ko00053 | Ascorbate and aldarate metabolism | 22 (3.81%) | 1.32E-10 |
3 | ko00710 | Carbon fixation in photosynthetic organisms | 23 (3.99%) | 2.95E-09 |
4 | ko00591 | Linoleic acid metabolism | 11 (1.91%) | 3.45E-06 |
5 | ko00592 | α-Linolenic acid metabolism | 15 (2.6%) | 1.47E-05 |
6 | ko00380 | Tryptophan metabolism | 11 (1.91%) | 5.32E-05 |
7 | ko00071 | Fatty acid metabolism | 15 (2.6%) | 7.20E-05 |
8 | ko00640 | Propanoate metabolism | 13 (2.25%) | 1.10E-04 |
9 | ko00410 | β-Alanine metabolism | 12 (2.08%) | 2.36E-04 |
10 | ko00310 | Lysine degradation | 12 (2.08%) | 6.02E-04 |
11 | ko00280 | Valine, leucine and isoleucine degradation | 15 (2.6%) | 6.02E-04 |
12 | ko00330 | Arginine and proline metabolism | 14 (2.43%) | 2.64E-03 |
13 | ko00902 | Monoterpenoid biosynthesis | 5 (0.87%) | 2.95E-03 |
14 | ko01100 | Metabolic pathways | 152 (26.34%) | 4.54E-03 |
15 | ko00910 | Nitrogen metabolism | 11 (1.91%) | 4.54E-03 |
16 | ko00340 | Histidine metabolism | 11 (1.91%) | 4.65E-03 |
17 | ko00500 | Starch and sucrose metabolism | 26 (4.51%) | 4.81E-03 |
18 | ko01110 | Biosynthesis of secondary metabolites | 76 (13.17%) | 5.13E-03 |
19 | ko00561 | Glycerolipid metabolism | 12 (2.08%) | 1.65E-02 |
20 | Ko00040 | Pentose and glucuronate interconversions | 679 (1.39%) | 1.65E-02 |
21 | ko04075 | Plant hormone signal transduction | 43 (7.45%) | 2.67E-02 |
22 | ko00904 | Diterpenoid biosynthesis | 5 (0.87%) | 2.75E-02 |
0 vs 48 h | ||||
1 | ko00710 | Carbon fixation in photosynthetic organisms | 24 (2.56%) | 2.00E-05 |
2 | ko00620 | Pyruvate metabolism | 27 (2.88%) | 2.22E-04 |
3 | ko04626 | Plant-pathogen interaction | 85 (9.06%) | 7.69E-04 |
4 | ko00902 | Monoterpenoid biosynthesis | 7 (0.75%) | 1.90E-03 |
5 | ko00904 | Diterpenoid biosynthesis | 9 (0.96%) | 2.66E-03 |
6 | ko00592 | α-Linolenic acid metabolism | 15 (1.6%) | 3.81E-03 |
7 | ko01040 | Biosynthesis of unsaturated fatty acids | 12 (1.28%) | 1.85E-02 |
8 | ko00270 | Cysteine and methionine metabolism | 14 (1.49%) | 4.74E-02 |
9 | ko00900 | Terpenoid backbone biosynthesis | 13 (1.39%) | 4.78E-02 |
10 | ko01100 | Metabolic pathways | 228 (24.31%) | 4.84E-02 |
