Table 4 Clinical isolates present in each clonal complex defined as groups of 24-loci MIRU-VNTR profiles within double-locus variants of each other.
From: Genetic diversity, transmission dynamics and drug resistance of Mycobacterium tuberculosis in Angola
Clonal Complex | Isolates | No. of Isolates (%) | Clade (No. of Isolates) |
|---|---|---|---|
CC1 | HDP7609, HDP7626, HDP7732, HDP8633, HDP9020, HDP7609, HDP8819, HDP7689, HDP7816, HDP7955, HDP8014, HDP8644, HDP7735, HDP8628, HDP7603, HDP7984, HDP7900, HDP7731 | 17 (19.3) | LAM1 (16), LAM6 (1) |
CC2 | HDP9025, HDP7630, HDP7942, HDP7844, HDP7768, HDP7870 | 6 (6.8) | LAM9 (5), LAM8 (1) |
CC3 | HDP8643, HDP7766, HDP7687, HDP7718, HDP8053, HDP7893 | 6 (6.8) | T1 (5), LAM10 (1) |
CC4 | HDP8044, HDP7909, HDP8039, HDP8784, HDP7702 | 5 (5.6) | T1 (5) |
CC5 | HDP7980, HDP8788, HDP7503, HDP8627 | 4 (4.5) | T1 (4) |
CC6 | HDP7753, HDP8033, HDP7737 | 3 (3.4) | LAM9 (2), LAM6 (1) |
CC7 | HDP7707, HDP7680, HDP8859 | 3 (3.4) | LAM1 (1), LAM2 (1), LAM9 (1) |
CC8 | HDP8796, HDP7711 | 2 (2.3) | T1 (1), Haarlem3/T1 (1) |
CC9 | HDP8045, HDP8015 | 2 (2.3) | T1 (2) |
CC10 | HDP8719, HDP7874 | 2 (2.3) | T3/X3 (1), LAM6 (1) |
CC11 | HDP8814, HDP8764 | 2 (2.3) | LAM3 (2) |
CC12 | HDP7803, HDP7937 | 2 (2.3) | LAM9 (2) |
