Table 5 Distribution of genotypic groups, MIRU-VNTR Clonal Complexes and SIT, through the Kilamba-Kiaxi and Viana municipalities.
From: Genetic diversity, transmission dynamics and drug resistance of Mycobacterium tuberculosis in Angola
Genotypic Group | No. of Isolates (%) | |
|---|---|---|
Kilamba-Kiaxi | Viana | |
Clonal Complex1 | ||
CC1 (LAM1) | 9 (26.47) | 3 (15.79) |
CC2 (LAM9) | 2 (5.88) | 2 (10.53) |
CC3 (T1) | 5 (14.71) | 1 (5.26) |
CC4 (T1) | 1 (2.94) | 2 (10.53) |
CC5 (T1) | 1 (2.94) | 1 (5.26) |
CC6 | 1 (2.94) | 0 (0) |
CC7 | 1 (2.94) | 0 (0) |
CC8 | 1 (2.94) | 0 (0) |
C9 (T1) | 0 (0) | 2 (10.53) |
CC10 | 1 (2.94) | 0 (0) |
CC11 (LAM3) | 12 (35.29) | 8 (42.11) |
Total | 34 (100) | 19 (100) |
Clade | ||
HAARLEM3/T1 | 1 (2.94) | 0 (0) |
LAM1 | 9 (26.47) | 2 (10.53) |
LAM1/LAM9 | 1 (2.94) | 0 (0) |
LAM10 | 1 (2.94) | 0 (0) |
LAM3 | 2 (5.88) | 0 (0) |
LAM4 | 2 (5.88) | 1 (5.26) |
LAM6 | 2 (5.88) | 1 (5.26) |
LAM8 | 2 (5.88) | 0 (0) |
LAM9 | 5 (14.71) | 4 (21.05) |
T1 | 9 (26.47) | 9 (47.37) |
T2 | 0 (0) | 1 (5.26) |
T3/X3 | 0 (0) | 1 (5.26) |
Total | 34 (100) | 19 (100) |
SIT | ||
144 | 1 (2.94) | 2 (10.53) |
1530 | 0 (0) | 0 (0) |
1548 | 1 (2.94) | 0 (0) |
1894 | 0 (0) | 0 (0) |
20 | 9 (26.47) | 2 (10.53) |
2025 | 1 (2.94) | 0 (0) |
244 | 2 (5.88) | 2 (10.53) |
290 | 1 (2.94) | 0 (0) |
306 | 0 (0) | 1 (5.26) |
33 | 1 (2.94) | 0 (0) |
42 | 4 (11.76) | 4 (21.05) |
52 | 0 (0) | 1 (5.26) |
53 | 4 (11.76) | 3 (15.79) |
60 | 2 (5.88) | 1 (5.26) |
635 | 1 (2.94) | 0 (0) |
64 | 1 (2.94) | 1 (5.26) |
95 | 1 (2.94) | 0 (0) |
Orphan | 5 (14.71) | 2 (10.53) |
Total | 34 (100) | 19 (100) |
