Table 2 PCR and sequencing primer.

From: Phylogenetic Characterizations of Highly Mutated EV-B106 Recombinants Showing Extensive Genetic Exchanges with Other EV-B in Xinjiang, China

Primer

Nucleotide position(nt)

Primer sequence (5′-3′)

Orientation

Reference

0001S48

 

GGGGACAAGTTTGTACAAAAAAGCAGGCTTTAAAACAGCTCTGGGGTT

Forward

31

5′ RACE-inner-primer-EV106-504A

483–504

TATCTGCTCCACAGTTAGGATT

Reverse

This study

5′ RACE-outer-primer-EV106-726A

705–726

GAGAGTGTTTAATGCTGTGTAG

Reverse

This study

EVP4

541–560

CTACTTTGGGTGTCCGTGTT

Forward

14

OL68-1

1178–1197

GGTAAYTTCCACCACCANCC

Reverse

14

EV106-1100S

1100–1120

GGCAGAGGATCAACCGACTCA

Forward

This study

EV106-1991S

1991–2012

CACATTCCAACTCGATCCAGGC

Forward

This study

EV106-2412A

2392–2412

TTCGCACTGAGAAGTCATTAC

Reverse

This study

490

2226–2248

TGIGTIYTITGYRTICCITGGAT

Forward

35

491

2883–2902

ATGTAYRTICCICCIGGNGG

Forward

35

492

2953–2934

GGRTTIGTIGWYTGCCA

Reverse

35

493

3641–3622

TCNACIANICCIGGICCYTC

Reverse

35

EV106-3035S

3035–3056

CAGCATGTTCTATGATGGCTGG

Forward

This study

EV106-3917A

3898–3917

CCACAATTACCAAGGCTGAT

Reverse

This study

EV106-3703S

3703–3722

AGGGTGTCGTCGGCTTTGCT

Forward

This study

EV106-4894A

4875–4894

CGGGCAGCATTTCTTGAAGT

Reverse

This study

EV106-4784S

4784–4803

GAGGTTTCACTTTGACATGA

Forward

This study

EV106-6043A

6023–6043

CTGAGGACTGCTGGTTCCTTT

Reverse

This study

EV106-6700S

6700–6719

ACCAGCAAGTTCCCAAACAT

Forward

This study

EV106-6888A

6869–6888

ATCATCCTGAACTGGTCCAA

Reverse

This study

EV106-6586S

6586–6605

GGAGTAAGATACCAGTGATG

Forward

This study

EV106-6995S

6995–7014

CATGACACCAGCAGATAAAG

Forward

This study

7500A

 

GGGGACCACTTTGTACAAGAAAGCTGGG(T)24

Reverse

31