Table 3 Simulated scenarios for the simulated Illumina HiSeq and NextSeq datasets.
From: Evaluating Variant Calling Tools for Non-Matched Next-Generation Sequencing Data
Sequencer | Error rate | Cov = 6,000x | Cov = 4,034x | Cov = 1,983x | Cov = 1,000x | Cov = 500x |
|---|---|---|---|---|---|---|
HiSeq | HiSeq | SIM1_E1_C1 | SIM1_E1_C2 | SIM1_E1_C3 | SIM1_E1_C4 | SIM1_E1_C5 |
HiSeq*2 | SIM1_E2_C3 | |||||
HiSeq/2 | SIM1_E3_C3 | |||||
HiSeq | SIM1_E1_C3_NPV | |||||
NextSeq | NextSeq | SIM2_E1_C1 | SIM2_E1_C2 | SIM2_E1_C3 | SIM2_E1_C4 | SIM2_E1_C5 |
NextSeq*2 | SIM2_E2_C2 | |||||
NextSeq/2 | SIM2_E3_C2 | |||||
NextSeq | SIM2_E1_C2_NPV |
