Table 1 ANI values (%) of isolates 103, 106 and 133 compared with other Clade 3 strains and representative strains of other clades.
Clade | Strain | ST | Genome accession no. | Country | Year | 103 ANI value | 106 ANI value | 133 ANI value |
|---|---|---|---|---|---|---|---|---|
3 | 103 | 5 | China | |||||
106 | 285 | China | 99.52 | |||||
133 | 5 | China | 99.51 | 99.25 | ||||
ZJCDC-S82 | 5 | JYNK01000000 | China | 2013 | 99.44 | 99.18 | 99.38 | |
OX2183 | 5 | C00005010 | UK | 2009 | 99.43 | 99.16 | 99.36 | |
OX1485 | 5 | C00004983 | UK | 2008 | 99.37 | 99.20 | 99.39 | |
OX561 | 22 | C00001506 | UK | 2007 | 99.42 | 99.20 | 99.41 | |
OX1232 | 25 | C00002723 | UK | 2007 | 99.46 | 99.18 | 99.49 | |
L058 | 96 | C00002452 | UK | 2008 | 99.48 | 99.23 | 99.37 | |
Q24 | 162 | C00006439 | Australia | 2008 | 99.43 | 99.23 | 99.28 | |
VL-0104 | 201 | FAAJ01000000 | Canada | NA | 99.49 | 99.18 | 99.37 | |
VL-0391 | 201 | FALK01000001 | Canada | NA | 99.48 | 99.28 | 99.36 | |
CD69 | 221 | AVHE01000000 | USA | 2010 | 99.41 | 99.22 | 99.52 | |
1 | E14 | 2 | CAMS01000000 | France | NA | 97.71 | 97.77 | 97.68 |
CD37 | 3 | AHJJ01000000 | USA | 1980 | 97.66 | 97.81 | 97.73 | |
P49 | 4 | AVMN01000000 | USA | NA | 97.91 | 97.91 | 97.77 | |
E25 | 6 | CAMJ01000000 | France | NA | 97.70 | 97.77 | 97.82 | |
E16 | 7 | CAMH01000000 | France | NA | 97.90 | 97.88 | 97.74 | |
P15 | 8 | AVLV01000000 | USA | 2005 | 97.92 | 97.90 | 97.90 | |
P8 | 10 | AVLR01000000 | USA | 2001 | 97.68 | 97.83 | 97.73 | |
T6 | 13 | CAMR01000000 | France | NA | 97.61 | 97.55 | 97.66 | |
P64 | 14 | AWZL01000000 | USA | 2009 | 97.66 | 97.71 | 97.61 | |
5.3 | 15 | AZSH01000000 | Australia | 2008 | 97.97 | 97.93 | 97.95 | |
DA00129 | 16 | AVIY01000000 | USA | 2010 | 97.52 | 97.46 | 97.77 | |
CD8-15 | 17 | LYDP01000000 | Italy | 2015 | 97.83 | 97.52 | 97.60 | |
P30 | 26 | AVME01000000 | USA | 2009 | 97.63 | 97.50 | 97.57 | |
CD200 | 28 | AVIF01000000 | USA | 2010 | 97.54 | 97.56 | 97.54 | |
P38 | 29 | AVMH01000000 | USA | 2009 | 97.67 | 97.55 | 97.55 | |
P7 | 34 | AVLQ01000000 | USA | NA | 97.83 | 97.53 | 97.62 | |
P29 | 35 | AVMD01000000 | USA | 2008 | 97.64 | 97.44 | 97.62 | |
E12 | 42 | CAMZ01000000 | France | NA | 97.94 | 97.93 | 97.84 | |
DA00126 | 43 | AVIW01000000 | USA | 2010 | 97.72 | 97.78 | 97.77 | |
CD45 | 44 | AVGY01000000 | USA | 2010 | 97.60 | 97.65 | 97.67 | |
CD113 | 45 | AVHN01000000 | USA | 2010 | 97.76 | 97.64 | 97.64 | |
ATCC43255 | 46 | CM000604 | Canada | 1935 | 97.77 | 97.78 | 97.73 | |
CD22 | 48 | AVGP01000000 | USA | 2010 | 97.73 | 97.82 | 97.60 | |
T17 | 49 | CAMT01000000 | France | NA | 97.98 | 97.74 | 97.76 | |
P11 | 53 | AVLT01000000 | USA | NA | 97.89 | 97.82 | 97.80 | |
CD630 | 54 | CP010905 | Switzerland | 1982 | 97.94 | 97.65 | 97.66 | |
T19 | 55 | CANA01000000 | France | NA | 98.09 | 97.82 | 97.87 | |
P46 | 58 | AVML01000018 | USA | 2009 | 97.76 | 97.77 | 97.71 | |
E7 | 63 | CAMV01000000 | France | NA | 97.75 | 97.73 | 97.63 | |
Y343 | 83 | AVLG01000000 | USA | 2010 | 97.81 | 97.89 | 97.77 | |
CD105KSE11 | 107 | FJVK01000000 | UK | NA | 98.05 | 97.77 | 97.22 | |
DA00216 | 110 | AVJX01000000 | USA | 2010 | 97.82 | 97.65 | 97.71 | |
DA00211 | 139 | AVJU01000000 | USA | 2010 | 97.87 | 97.47 | 97.52 | |
2 | CD196 | 1 | NC_013315 | France | 1985 | 97.89 | 97.66 | 97.76 |
E19 | 62 | CAMO01000000 | France | 2012 | 97.94 | 97.59 | 97.79 | |
T23 | 67 | CAMN01000000 | France | NA | 97.79 | 97.71 | 97.84 | |
E15 | 95 | CAMM01000000 | France | NA | 97.51 | 97.54 | 97.58 | |
P59 | 123 | AVMQ01000000 | USA | 2009 | 97.57 | 97.58 | 97.59 | |
4 | M68 | 37 | NC_017175 | UK | 2006 | 97.59 | 97.58 | 97.48 |
CF5 | 86 | FN665652 | Belgium | 1995 | 97.78 | 98.08 | 97.85 | |
CD002 | 170 | CAMG01000000 | France | 2010 | 97.74 | 98.06 | 97.71 | |
6503 | 320 | ADEI01000000 | USA | 2009 | 97.76 | 97.84 | 97.38 | |
5 | M120 | 11 | NC_017174 | UK | 2007 | 96.31 | 96.33 | 96.32 |
C-I | CD105KSO8 | 297 | FJUI01000000 | UK | NA | 91.24 | 91.43 | 90.45 |
