Table 3 PaLoc of isolates 103, 106 and 133 compared with other Clade 3 strains and a representative strain of each Clade 1, 2 and 5.
Clade | Strain | tcdR | tcdB | tcdE | Tn6218 | tcdA | tcdC | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
int | xis | rep | xre | merR | oxidoreductase | flavodoxin | orf | σ70 | |||||||
1 | CD630 | 12 (6NS) | 92 (48NS) | 5 + 31nt del + 1nt in (7NS + 10 del) | — | — | — | — | — | — | — | — | — | 116 (44NS) | 5 + 318nt del (1NS + 106 del) |
2 | CD196 | 12 (6NS) | 446 (175NS) | 3 + 31nt del + 1nt in (6NS + 10 del) | — | — | — | — | — | — | — | — | — | 89 + 63nt del (34NS + 21 del) | 4 + 36nt del (12 del) |
5 | M120 | 18 (8NS) | 173 (87NS) | 4 + 42nt in (2NS + 14 in) | — | — | — | — | — | — | — | — | — | 89SNP + 63nt del (44NS + 21 del) | 3 + 15nt del (3NS + 5 del)a |
3 | ZJCDC-S82 | ID | 6 (3NS) | ID | ID | ID | 5 (3NS) | ID | ID | ID | ID | ID | 11 + 210nt in (5NS + 70 del) | 18 (11NS) | 36nt del (12 del) |
CD69 | ID | 12 (7NS) | ID | 3 (4NS) | ID | 5 (3NS) | ID | ID | ID | ID | ID | ID | 153 (73NS) | ID | |
VL-0391 | ID | 2 (2NS) | ID | 7 (4NS) | ID | 3 (3NS) | 1 (1NS) | ID | 1 (1NS) | 1 (1NS) | ID | 1 (0NS) | 11 + 36nt del (5NS + 12 del) | 36nt del (12 del) | |
VL-0104 | ID | 2 (2NS) | ID | 8 (4NS) | ID | 3 (3NS) | 1 (1NS) | ID | 1 (1NS) | 1 (1NS) | ID | 1 (0NS) | 11 + 36nt del (5NS + 12 del) | 36nt del (12 del) | |
L058 | 1 (1NS) | 5 (2NS) | ID | 5 (3NS) | ID | 3 (2NS) | ID | ID | 2 (2NS) | ID | ID | ID | 8 (4NS) | ID | |
OX561 | 1 (1NS) | 6 (3NS) | ID | 9 (3NS) | 1 (1NS) | 2 (2NS) | ID | ID | 1 (1NS) | ID | ID | ID | 7 + 63nt del (5NS + 21 del) | ID | |
OX1232 | 1 (1NS) | 6 (3NS) | ID | 8 (3NS) | ID | 2 (2NS) | ID | ID | 1 (1NS) | ID | ID | ID | 14 (10NS) | ID | |
OX1485 | 1 (1NS) | 5 (3NS) | ID | 8 (3NS) | ID | 2 (2NS) | ID | ID | 1 (1NS) | ID | ID | ID | 37 (21NS) | ID | |
OX2183 | ID | 3 (3NS) | ID | ID | 47nt in (9 in) | 5 (3NS) | ID | ID | ID | ID | ID | ID | 51 (23NS) | 36nt del (12 del) | |
Q24 | ID | 8 (4NS) | ID | 7 (2NS) | 1 (1NS) | 2 + 108nt in (1NS + 36 in) | 2 (1NS) | 1 (1NS) | 1 (1NS) | 3 (0NS) | 2 (0NS) | ID | 62 (35NS) | 36nt del (12 del) | |
