Table 5 Number of significant motifs identified in the 3′ UTRs of translationally regulated genes.
Motif length | De novo motif discovery tool | NYdown | NYup | YNdown | YNup | YYdown | YYup |
|---|---|---|---|---|---|---|---|
6-mer | Seeder | 3 | 16 | 3 | 1 | 3 | None |
MEME | 1 | 1 | None | None | None | None | |
Weeder | None | None | None | 1 | 1 | 1 | |
8-mer | Seeder | 56 | 62 | 29 | 7 | 22 | None |
MEME | 6 | 3 | 2 | None | None | None | |
Weeder | 1 | 1 | 1 | 1 | 1 | 1 |
