Table 6 Number of significant motifs identified in the 5′ UTRs of translationally regulated genes.
Motif length | De novo motif discovery tool | NYdown | NYup | YNdown | YNup | YYdown | YYup |
|---|---|---|---|---|---|---|---|
6-mer | Seeder | 36 | 91 | 79 | 36 | 86 | None |
MEME | 87 | 28 | 81 | 140 | 27 | None | |
Weeder | None | None | None | 1 | 1 | 1 | |
8-mer | Seeder | 57 | 39 | 50 | 42 | 49 | None |
MEME | 6 | 8 | 8 | 7 | 4 | None | |
Weeder | 1 | 1 | 1 | 1 | 1 | 1 |
