Table 7 Translationally regulated genes with motifs [U(G/A)U(A/G)U(G/A)U] recognized by Bruno-like protein in their 3′ UTR.

From: De novo computational identification of stress-related sequence motifs and microRNA target sites in untranslated regions of a plant translatome

Gene ID

Gene description

Position

Sequence that matches to Bruno-like protein motif

AT2G06520

Encodes a protein similar to spinach photosystem II subunit PsbX

−94

C UGUGAU

AT4G38460

Geranylgeranyl reductase involved in isoprenoid biosynthetic process

−169

C UGUGAU

AT5G57350

Arabidopsis H(+)-ATPase

−230

C UGUGAU

AT2G06520

Encodes a protein similar to spinach photosystem II subunit PsbX

−93

UGUGUAU U

AT5G53030

Unknown protein

−70

UGUGUAU A

AT2G29670

Tetracopeptide repeat-like superfamily protein

−256

U UAUGUAU

AT4G38460

Geranylgeranyl reductase involved in isoprenoid biosynthetic process

−19

C UAUGUAU

AT4G38460

Geranylgeranyl reductase involved in isoprenoid biosynthetic process

−15

G UAUGUAU

AT4G25570

Alpha/beta-Hydrolases superfamily protein

−143

U UAUGUAU

AT4G14500

Polyketide cyclase/dehydrase and lipid transport superfamily protein

−54

A UAUGUAU

AT1G56280

Unknown protein

−289

C UAUGUAU

AT3G54220

Similar to DNA binding protein containing basic-leucine zipper region

−95

U UAUGUAU

AT4G30400

RING/U-box superfamily protein

111

UAUCAUA U

AT3G46450

Cytosolic factor family protein/Phosphoglyceride transfer family protein

59, 95

AUACAUA G

AT3G54220

Similar to DNA binding protein containing basic-leucine zipper region

138

AUACAUA G

AT2G34070

Member of TRICHOME BIREFRINGENCE-LIKE gene family

11

A AUACACA

AT2G29670

Tetracopeptide repeat-like superfamily protein

66

U AUACACA

  1. *Bold and underlined represents the sequence that matches to motif.