Table 8 Translationally regulated genes with motifs [UGUA (A/C/U) AUA] recognized by Pumilio protein in their 3′ UTR.

From: De novo computational identification of stress-related sequence motifs and microRNA target sites in untranslated regions of a plant translatome

Gene ID

Gene description

Position

Sequence that matches to Pumilio protein motif

AT4G25570

Encodes cytochrome b561

−85

UG UGUAAA

AT3G01400

ARM repeat superfamily protein

−165

GG UGUAUA

AT5G53030

Unknown protein

−70

UG UGUAUAU

AT1G78630

Embryo defective 1473 involved in embryo development

206

UG ACAUGU

AT3G49670

Encodes a CLAVATA1-related kinase-like protein

204

A UAUGUAC

AT4G30400

RING/U-box superfamily protein

111

AU ACAUAU

AT4G00490

Encodes a chloroplast beta-amylase enzyme

−220

UU ACAUAU

AT4G17080

Histone H3 K4-specific methyltransferase SET7/9 family protein

−132

GU ACAUAU

  1. *Bold and underlined represents the sequence that matches to motif.
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