Table 1 Genetic diversity measures of the Brachionus plicatilis sensu stricto populations.

POND	Hydroperiod		Parthenogenetic phase	N	MLG	D*	PL	A	Rs	He	F_IS
3N3	1	Mar + Apr-06	1^st	129	89	0.99	6	30	4.50	0.444	0.05
	2	Jan + Mar-07	2^nd	104	102	1.00	6	31	4.85	0.494	−0.01
	3	Feb + Apr-08	3^rd	101	100	1.00	6	29	4.73	0.490	−0.01
6N2	1	Apr-06	1^st	63	1^●	0.00	3	9	1.50	0.250	−1.00*
	2	Jan-07	2^nd	54	22	0.95	3	14	2.19	0.260	−0.05
	2	May-07	2^nd	54	31	0.98	5	21	3.28	0.335	0.11
	3	Feb-08	3^rd	57	57	1.00	4	26	4.07	0.451	−0.05
AC3	1	Apr-06	1^st	62	4^●	0.60	4	14	2.33	0.292	−0.12
	2	Nov-06	2^nd	63	30	0.96	4	14	2.33	0.288	−0.28*
	3	Feb-08	3^rd	53	22	0.95	6	16	2.59	0.310	−0.30*
AE6	1	Apr-06	1^st	55	2^●	0.28	4	13	2.17	0.384	−0.52*
	2	Nov-06	2^nd	51	39	0.99	4	13	2.17	0.397	−0.14
	3	Feb-08	3^rd	51	20	0.91	4	13	2.17	0.369	−0.30*
AE5	1	Apr-06	1^st	64	9^●	0.78	6	23	3.70	0.364	−0.02
0S1	1	Apr-06	1^st	64	11^●	0.90	5	24	3.82	0.418	0.01
0N2	3	Feb-08	?	53	32	0.98	6	24	3.76	0.357	−0.22*
0S2	3	Dec-07	?	51	48	1.00	6	21	3.48	0.392	−0.03
0S3	3	Dec-07	?	49	47	1.00	6	24	3.89	0.400	−0.05
	3	Apr-08	?	50	47	1.00	6	21	3.40	0.379	−0.03
2S1	3	Apr-08	1^st	56	6	0.17	5	17	2.67	0.287	−0.74*
6S2	3	Apr-08	1^st	55	9	0.67	4	17	2.77	0.326	−0.08
10S4	3	Feb-08	1^st	41	9	0.74	5	19	3.17	0.343	−0.31*
AC4	3	Apr-08	1^st	58	1^●	0.00	5	11	1.83	0.417	−1.00*
AE7	3	Apr-08	1^st	57	3	0.13	4	13	2.02	0.260	−0.93*

N, sample size; MLG, number of clones; D^*, clonal diversity; PL, number of polymorphic loci; A, number of alleles; Rs, average allelic richness corrected for the sample size; He, average expected heterozygosity; Fis, inbreeding coefficient where (*) indicates significance deviation from HWE at p-value < 0.00035 after Bonferroni correction. The MLG estimates with (^●) should be considered as the real number of clones according to GenClone 2.0; the rest as underestimates.

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