Table 1 Top 20 genes differentially expressed in COPD vs. control.

From: Functional interactors of three genome-wide association study genes are differentially expressed in severe chronic obstructive pulmonary disease lung tissue

Probe name

Log Fold Difference*

p-value

FDR q-value

Gene symbol

ILMN_1676938

−0.9164

5.40E-010

1.77E-005

HMGB1

ILMN_3187508

−0.6609

1.70E-009

2.79E-005

FLJ40504

ILMN_2050921

−0.6510

3.16E-009

3.46E-005

C3orf78

ILMN_2398474

−0.7957

2.11E-008

1.73E-004

RAP1B

ILMN_3245015

−0.6185

3.18E-008

2.09E-004

LOC440563

ILMN_1665333

−0.7186

6.52E-008

3.57E-004

SUMO2

ILMN_1705330

−0.7185

8.61E-008

4.04E-004

CDC42

ILMN_1656898

−0.7223

1.31E-007

5.37E-004

PTCD1

ILMN_3266294

−0.6043

1.66E-007

6.05E-004

SREK1IP1

ILMN_1696031

−0.5292

1.99E-007

6.22E-004

C15orf21

ILMN_1691485

−0.6776

2.08E-007

6.22E-004

GTF2H2

ILMN_3191922

−0.8825

2.28E-007

6.24E-004

FLJ46111

ILMN_2068122

−0.6563

3.42E-007

8.63E-004

TMEM65

ILMN_3239871

−0.5563

4.85E-007

1.07E-003

ARPP19

ILMN_3219808

−0.5897

4.90E-007

1.07E-003

HNRNPA1

ILMN_1716246

0.8208

5.94E-007

1.22E-003

FRZB

ILMN_3183789

−0.3577

7.60E-007

1.47E-003

UQCRFS1

ILMN_1799837

−0.6066

1.07E-006

1.95E-003

POTEM

ILMN_2141398

−0.6715

1.32E-006

2.24E-003

VEZT

ILMN_1674399

0.3467

1.40E-006

2.24E-003

ZNF143

  1. *Reference group is controls: positive log fold difference corresponds to higher expression in cases.