Table 2 Differentially methylated regions in predefined genomic regions with adjusted p-value < 0.05 and containing at least 10 CpG sites.
From: Sex differences in DNA methylation of the cord blood are related to sex-bias psychiatric diseases
ID | Chromosome | Start | End | Gene symbol | entrezID | Mean difference | Combined adjP | CpG sites |
---|---|---|---|---|---|---|---|---|
CpG islands | ||||||||
20510 | chr17 | 20798958 | 20800112 | −0,046 | 3,79E-03 | 11 | ||
22902 | chr19 | 6495193 | 6496225 | −0,017 | 1,94E-03 | 10 | ||
25607 | chr21 | 27106815 | 27108211 | −0,003 | 2,13E-03 | 10 | ||
4617 | chr3 | 57993839 | 57994704 | 0,007 | 1,11E-02 | 12 | ||
3768 | chr2 | 208576002 | 208577106 | 0,016 | 1,68E-03 | 10 | ||
4494 | chr3 | 49394856 | 49395942 | 0,017 | 1,08E-02 | 10 | ||
18564 | chr15 | 101094521 | 101099493 | 0,020 | 7,65E-03 | 13 | ||
18889 | chr16 | 2569560 | 2571071 | 0,024 | 1,22E-02 | 13 | ||
16491 | chr13 | 25874995 | 25876200 | 0,026 | 3,76E-02 | 12 | ||
7248 | chr5 | 149546028 | 149546988 | 0,058 | 2,20E-03 | 10 | ||
Promoters | ||||||||
ENSG00000237268 | chr7 | 56515569 | 56517568 | NA | NA | −0,047 | 9,62E-03 | 13 |
ENSG00000205212 | chr17 | 20798954 | 20800953 | CCDC144NL | 339184 | −0,042 | 1,02E-02 | 12 |
ENSG00000155918 | chr6 | 150346169 | 150348168 | RAET1L | 154064 | −0,020 | 3,75E-02 | 11 |
ENSG00000136068 | chr3 | 57992627 | 57994626 | FLNB | 2317 | 0,007 | 1,39E-02 | 12 |
ENSG00000163249 | chr2 | 208574764 | 208576763 | CCNYL1 | 151195 | 0,017 | 1,91E-03 | 10 |
ENSG00000162066 | chr16 | 2568858 | 2570857 | AMDHD2 | 51005; 752014 | 0,026 | 1,21E-02 | 13 |
ENSG00000139496 | chr13 | 25874162 | 25876161 | NUPL1 | 9818 | 0,027 | 4,45E-02 | 13 |
ENSG00000157911 | chr1 | 2344737 | 2346736 | PEX10 | 5192 | 0,040 | 8,61E-03 | 13 |
ENSG00000113722 | chr5 | 149544858 | 149546857 | CDX1 | 1044 | 0,046 | 4,24E-02 | 10 |
Genes | ||||||||
ENSG00000189136 | chr15 | 85070012 | 85114447 | UBE2Q2P1 | 388165 | −0,022 | 9,38E-05 | 10 |
ENSG00000120705 | chr5 | 137841784 | 137878989 | ETF1 | 2107 | −0,009 | 1,24E-02 | 10 |
ENSG00000164754 | chr8 | 117858174 | 117887105 | RAD21 | 5885 | −0,008 | 3,62E-02 | 12 |
ENSG00000100902 | chr14 | 35747839 | 35786699 | PSMA6 | 5687 | −0,004 | 2,32E-02 | 12 |
ENSG00000154727 | chr21 | 27106881 | 27144771 | GABPA | 2551 | −0,003 | 4,83E-02 | 15 |
ENSG00000154723 | chr21 | 27088815 | 27107984 | ATP5J | 522 | −0,001 | 3,91E-02 | 14 |
ENSG00000176714 | chr2 | 27848506 | 27851879 | CCDC121 | 79635 | 0,016 | 6,56E-05 | 12 |
ENSG00000241186 | chr3 | 46616045 | 46668033 | TDGF1 | 6997 | 0,016 | 7,33E-03 | 18 |
ENSG00000196781 | chr9 | 84198598 | 84304220 | TLE1 | 7088 | 0,030 | 5,00E-05 | 16 |
ENSG00000110243 | chr11 | 116660083 | 116663136 | APOA5 | 116519 | 0,034 | 1,68E-02 | 10 |
ENSG00000163749 | chr4 | 77234154 | 77343021 | CCDC158 | 339965 | 0,034 | 3,55E-02 | 12 |
ENSG00000175773 | chr11 | 130184888 | 130263688 | NA | NA | 0,039 | 7,27E-05 | 14 |
ENSG00000121410 | chr19 | 58856544 | 58864865 | A1BG | 1 | 0,050 | 1,42E-02 | 12 |
ENSG00000268895 | chr19 | 58859117 | 58866549 | A1BG-AS1 | 503538 | 0,054 | 2,79E-03 | 12 |
Genome-wide tiling regions | ||||||||
258039 | chr7 | 56515001 | 56520000 | −0,046 | 2,44E-02 | 15 | ||
278217 | chr7 | 157405001 | 157410000 | −0,044 | 4,02E-02 | 14 | ||
504201 | chr17 | 20795001 | 20800000 | −0,039 | 2,28E-02 | 13 | ||
478486 | chr15 | 85110001 | 85115000 | −0,020 | 6,65E-04 | 11 | ||
533197 | chr19 | 6495001 | 6500000 | −0,014 | 1,94E-02 | 12 | ||
41882 | chr1 | 209405001 | 209410000 | −0,010 | 1,88E-02 | 10 | ||
447146 | chr14 | 35760001 | 35765000 | −0,005 | 4,10E-02 | 10 | ||
55422 | chr2 | 27850001 | 27855000 | 0,011 | 2,56E-02 | 20 | ||
91567 | chr2 | 208575001 | 208580000 | 0,014 | 1,66E-02 | 12 | ||
481683 | chr15 | 101095001 | 101100000 | 0,021 | 2,99E-03 | 11 | ||
340633 | chr10 | 22765001 | 22770000 | 0,024 | 1,52E-02 | 11 | ||
96502 | chr2 | 233250001 | 233255000 | 0,027 | 4,67E-02 | 11 | ||
107815 | chr3 | 46615001 | 46620000 | 0,032 | 5,47E-03 | 10 | ||
137680 | chr3 | 195940001 | 195945000 | 0,033 | 2,59E-02 | 13 | ||
507646 | chr17 | 38020001 | 38025000 | 0,038 | 2,43E-03 | 11 | ||
213529 | chr6 | 5085001 | 5090000 | 0,039 | 4,10E-02 | 14 | ||
206237 | chr5 | 149545001 | 149550000 | 0,045 | 2,93E-02 | 13 | ||
549738 | chr20 | 30070001 | 30075000 | 0,047 | 3,07E-02 | 12 | ||
66673 | chr2 | 84105001 | 84110000 | 0,050 | 2,35E-08 | 11 | ||
543670 | chr19 | 58860001 | 58865000 | 0,065 | 7,02E-04 | 10 |