Table 1 Performance evaluation on the combined test set of cropPAL crop plant proteins and UniProt plant proteins.
From: LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell
| Â | Sensitivity | Specificity | PPV | MCC | Accuracy |
|---|---|---|---|---|---|
Chloroplast (120 proteins) | |||||
LOCALIZER | 72.5% | 95.7% | 79.1% | 0.71 | 91.4% |
TargetP | 75% | 92.9% | 70.3% | 0.66 | 89.6% |
ChloroP | 72.5% | 86.7% | 55.1% | 0.53 | 84% |
WoLF PSORT | 80.8% | 73.1% | 40.4% | 0.43 | 74.5% |
Predotar | 67.5% | 95.9% | 78.6% | 0.67 | 90.6% |
YLoc | 77.5% | 81.2% | 48.2% | 0.5 | 80.5% |
BaCelLo | 75% | 80% | 46.6% | 0.47 | 79.1% |
Mitochondria (65 proteins) | |||||
LOCALIZER | 60% | 95.2% | 58.2% | 0.54 | 91.7% |
TargetP | 64.6% | 89.1% | 39.6% | 0.44 | 86.7% |
WoLF PSORT | 21.5% | 95.7% | 35.9% | 0.22 | 88.3% |
Predotar | 60% | 94.4% | 54.2% | 0.52 | 91% |
YLoc | 46.2% | 94% | 46.2% | 0.4 | 89.3% |
BaCelLo | 6.2% | 99.7% | 66.7% | 0.18 | 90.3% |
Nucleus (225 proteins) | |||||
LOCALIZER | 60% | 79.9% | 61.1% | 0.4 | 73% |
WoLF PSORT | 55.1% | 92.7% | 80% | 0.53 | 79.8% |
YLoc | 61.8% | 89.2% | 75.1% | 0.54 | 79.8% |
BaCelLo | 82.2% | 62.1% | 53.3% | 0.42 | 69% |
NLStradamus | 32.9% | 86.9% | 56.9% | 0.24 | 68.3% |
PredictNLS | 8.9% | 98.6% | 76.9% | 0.18 | 67.6% |
