Figure 2: Classification of differentially expressed genes (DEGs) based on predicted functions. | Scientific Reports

Figure 2: Classification of differentially expressed genes (DEGs) based on predicted functions.

From: Enzyme IIANtr Regulates Salmonella Invasion Via 1,2-Propanediol And Propionate Catabolism

Figure 2

(a) DEG analysis from RNA-seq data between wild-type Salmonella and the ΔptsN mutant strain. The y-axis shows the log-scaled RPKM values of wild-type, and the x-axis shows the log-scaled RPKM values of the ΔptsN mutant strain. Total gene expressions in the two strains (left) were filtered to sort significantly down- or up-regulated genes (right) with the criteria of p-value ≤ 0.05 and fold-change ≥3. (b) Genes up-regulated or down-regulated by 3-fold or more in the ΔptsN mutant strain are grouped into functional categories. Genes are annotated based on the cluster of orthologous groups database.

Back to article page