Table 2 Sequence sets used for each crab and shrimp group with mtDNA 16 S and COI partial sequences.

From: Molecular characterization reveals the complexity of previously overlooked coral-exosymbiont interactions and the implications for coral-guild ecology

Gene	Groups	Phylogenetic model	Genus	Species	Present study			External sequences
Gene	Groups	Phylogenetic model	Genus	Species	Number	Accession no.	Location	Accession no.	Library	Location	Citation
16 S	Shrimp	K2 + G	Alpheus	A. lottini L1	N = 38	KY746726-KY746763	NC, RI	—	—	—	—
		G = 0.21	Alpheus	A. lottini L2	N = 31	KY746764-KY746794	NC	KP725488.1	Genbank	Mayotte	[1]
			Alpheus	A. angulosus	N = 1	—	—	FJ528454	Genbank		[2]
	Crab	HKY + G	Quadrella	Q. maculosa	N = 1	—	—	FJ548954	Genbank		[3]
		G = 0.16	Trapezia	T. guttata	N = 50	KY747168-KY747217	RI, NC
			Trapezia	T. serenei	N = 5	KY747063-KY747067	RI, NC
			Trapezia	T. bella	N = 5	KY747058-KY747062	RI
			Trapezia	T. speciosa	N = 57	KY747068-KY747124	RI
			Trapezia	T. cymodoce	N = 8	KY747050-KY747057	NC
			Trapezia	T. lutea L1	N = 5	KY747039-KY747043	RI
			Trapezia	T. lutea L2	N = 6	KY747044-KY747049	NC
			Trapezia	T. bidentata L1	N = 2	KY747036-KY747037	RI
			Trapezia	T. bidentata L2	N = 1	KY747038	NC
			Trapezia	T. septata	N = 43	KY747125-KY747167	NC
COI	Shrimps	K2 + G + I	Alpheus	A. lottini L1	N = 46	KY746795-KY746840	NC, RI
		G = 2.28	Alpheus	A. lottini L2	N = 32	KY746841-KY746872	NC, NC	MBMIA477-06	BOLD	FP
		I = 0.68	Alpheus	A. idiocheles	N = 1			MBMIA293-06	BOLD	FP
	Crab	GTR + G	Lybia	L. sp. LP-2009	N = 1	—	—	GQ260943	Genbank	NLI	[4]
		G = 0.25	Trapezia	T. guttata	N = 52	KY746954-KY747005	RI	GBCMD9223-13	BOLD	Australia	[5]
			Trapezia	T. serenei	N = 5	KY747031-KY747035	RI, NC	MBMIA599-06	BOLD	FP
			Trapezia	T. bella	N = 5	KY747026-KY747030	RI
			Trapezia	T. speciosa	N = 50	KY746873-KY746922	RI
			Trapezia	T. cymodoce	N = 4	KY747018-KY747021	NC	HM751069	Genbank		[6]
			Trapezia	T. lutea L1	N = 5	KY747006-KY747010	RI
			Trapezia	T. lutea L2	N = 7	KY747011-KY747017	NC
			Trapezia	T. bidentata L1	N = 2	KY747022-KY747023	RI
			Trapezia	T. bidentata L2	N = 2	KY747024-KY747025	NC
			Trapezia	T. bidentata L3	N = 1	—	—	GQ260917.1	Genbank	Line Islands	DS
			Trapezia	T. septata	N = 31	KY746923-KY746953	NC	GBCMD9204-13	BOLD	Australia	[5]
			Trapezia	T. tigrina	N = 1			MBMIA398-06	BOLD	FP	DS
			Trapezia	T. punctimanus	N = 1			MBMIA186-06	BOLD	FP	DS
			Trapezia	T. rufopunctata	N = 1			MBMIA534-06	BOLD	FP	DS

The nucleotide substitution models used are indicated as follows: K2 for Kimura-2-parameter⁷¹, HKY for Hasegawa-Kishino-Yano⁷² and GTR for General Time Reversible⁷³, with Gamma correction (G) and/or with a certain fraction of sites evolutionary invariable (+I). Locations are coded as follows: RI for Reunion Island, NC for New Caledonia, FP for French Polynesia and LNI for northern Line Islands.
[1]⁷⁴; [2]⁷⁵; [3]⁷⁶; [4]⁷⁷; [5]⁹; [6]⁷⁸; DS direct submission.

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Table 2 Sequence sets used for each crab and shrimp group with mtDNA 16 S and COI partial sequences.

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