Table 3 Differential expression of MADS-box genes in three DGE libraries.

From: Comparative Transcriptomic Analysis of Vernalization- and Cytokinin-Induced Floral Transition in Dendrobium nobile

Gene ID

Homologs

CK-RPKM

LT-RPKM

TDZ-RPKM

Unigene28095_TRA

DtpsMADS1 [Doritaenopsis hybrid cultivar] (AP1-like)

17.20851

20.68192

11.42396

CL12116.Contig1_TRA*2

DtpsMADS1 [Doritaenopsis hybrid cultivar] (AP1/FUL)

0.819994

0.835173

0

CL12116.Contig2_TRA*3

DnMADS1 [D. nobile] (AP1/FUL)

0

0.287894

0.284313

CL12116.Contig3_TRA*3

DnMADS1 [D. nobile] (AP1/FUL)

1.035041

0

0

CL15749.Contig1_TRA*2

DthylFL2 [D. thyrsiflorum] (AP1/FUL)

0

0

0.2565

CL15749.Contig2_TRA*1

DthylFL2 [D. thyrsiflorum] (AP1/FUL)

0.289641

0.590005

0.291333

CL1911.Contig1_TRA*3

DthylFL2 [D. thyrsiflorum] (AP1/FUL)

1.889471

2.405559

0.950255

CL16053.Contig1_TRA

DthylFL3 [D. thyrsiflorum] (AP1/FUL)

5.326266

8.266453

3.061361

Unigene31055_TRA

CfAP11 [Cymbidium faberi] (AP1/FUL)

8.965962

9.740725

5.411004

CL16053.Contig2_TRA*1

CfAP11 [Cymbidium faberi] (AP1-like)

0.347569

0.708006

0.3496

CL16305.Contig1_TRA

AP1-like MADS-box protein [Cymbidium ensifolium]

135.6404

228.2286

160.6501

Unigene24218_TRA

ORAP13 [Phalaenopsisamabilis] (AP1-like)

1.501192

2.117049

2.090716

Unigene24219_TRA

ORAP13 [Phalaenopsisamabilis] (AP1-like)

2.98443

5.572736

2.12632

CL4716.Contig1_TRA

PeSOC1 [Phalaenopsisequestris]

7.89774

7.097589

10.98124

Unigene29514_TRA

PeSOC1 [Phalaenopsisequestris]

130.3432

144.6503

185.2895

Unigene34271_TRA

PeSOC1 [Phalaenopsisequestris]

22.49251

17.94527

30.1652

Unigene44320_TRA*2

HvSOC1 [Hordeumvulgare]

1.232624

1.25544

0.49593

Unigene44321_TRA*1

HvSOC1 [Hordeumvulgare]

0.324345

0.660697

0.326239

CL14402.Contig1_TRA

StMADS11-1 [Elaeisguineensis] (SVP-like)

70.08733

85.46903

59.67854

CL14402.Contig2_TRA

AtqMADS5 [Agave tequilana] (SVP-like)

1.823389

1.857141

2.200849

CL12576.Contig1_TRA*3

DOMADS3 [D.grex Madame Thong-In] (SEP)

1.129999

2.137416

2.273201

CL12576.Contig2_TRA*3

DOMADS3 [D.grex Madame Thong-In] (SEP)

0.396523

0

0

Unigene50333_TRA*1

DcOAG1 [D.crumenatum] (AG-like)

1.711436

0.871558

1.506255

Unigene54214_TRA

DnMADS2 [D. nobile](AG-like)

2.003781

2.040872

2.015487

CL3879.Contig1_TRA*1

OsMADS27 [Oryza sativa] (AGL16)

2.426993

0.463485

1.983452

CL3879.Contig2_TRA

OsMADS27 [Oryza sativa] (AGL21)

1.779795

2.966303

2.766661

Unigene27314_TRA

CsatAGL6a [Crocus sativus] (AGL6)

10.54833

7.594603

11.15874

CL7312.Contig2_TRA*2

mads box protein [Ricinuscommunis] (ZMM17)

0

0

0.1311

  1. Expression differences were determined by RPKM (Reads Per kb per Million reads) values calculated according to the method provided by Mortazavi and Williams (2008). Genes with a log2Ratio ≥ 1 of CK and LT samples were marked with *1, those of CK and TDZ samples were marked with *2, and genes with a log2Ratio ≥ 1 both of CK and LT and of CK and TDZ were marked with *3.
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