Table 1 Description and distribution of aquaporins identified from flax genome. Fifty one aquaporins belonging to five different classes such as PIPs(1–16), TIPs(17–33), NIPs(34–46), SIPs(47–49), and XIPs(49–51) along with their gene identifiers, gene length, and transcript length are identified in 43 scaffolds in flax genome.
Sl. No. | Gene | Phytozome ID | GigaDB ID | Gene Length (bp) | Trasncript Length (bp) | Protein length (aa) | Protein Molwt (kD) | Scaffold | No. of EST Hits | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
Location | Start | End | |||||||||
1 | LuPIP1-1 | Lus10014840 | Lus_GLEAN_10016863 | 1142 | 912 | 303 | 32.65 | scaffold 184 | 520725 | 521866 | 12 |
2 | LuPIP1-2 | Lus10028273 | Lus_GLEAN_10031922 | 1202 | 864 | 287 | 30.72 | scaffold 327 | 962214 | 963415 | 18 |
3 | LuPIP1-3 | Lus10035483 | Lus_GLEAN_10039971 | 1647 | 864 | 287 | 30.58 | scaffold 151 | 1507188 | 1508834 | 19 |
4 | LuPIP1-4 | Lus10024651 | Lus_GLEAN_10027791 | 1954 | 864 | 287 | 30.64 | scaffold 349 | 539057 | 541010 | 25 |
5 | LuPIP1-5 | Lus10032283 | Lus_GLEAN_10036266 | 1866 | 864 | 287 | 30.64 | scaffold 291 | 481896 | 483761 | 10 |
6 | LuPIP2-1 | Lus10027467 | Lus_GLEAN_10031032 | 1662 | 849 | 282 | 29.89 | scaffold 96 | 495844 | 497505 | 52 |
7 | LuPIP2-2 | Lus10014978 | Lus_GLEAN_10017015 | 2228 | 849 | 282 | 29.99 | scaffold 2022 | 333007 | 335234 | 24 |
8 | LuPIP2-3 | Lus10039222 | Lus_GLEAN_10044037 | 1931 | 849 | 282 | 29.88 | scaffold 33 | 47244 | 49174 | 37 |
9 | LuPIP2-4 | Lus10021475 | Lus_GLEAN_10024185 | 4072 | 750 | 249 | 27.12 | scaffold 612 | 628892 | 632963 | 5 |
10 | LuPIP2-5 | Lus10022577 | Lus_GLEAN_10025492 | 847 | 594 | 197 | 21.28 | scaffold 59 | 8029 | 8875 | 0 |
11 | LuPIP2-6 | Lus10023184 | Lus_GLEAN_10026156 | 949 | 864 | 287 | 30.64 | scaffold 325 | 843924 | 844872 | 17 |
12 | LuPIP2-7 | Lus10019934 | Lus_GLEAN_10022468 | 1680 | 861 | 286 | 30.41 | scaffold 1491 | 745462 | 747141 | 1 |
13 | LuPIP2-8 | Lus10026504 | Lus_GLEAN_10029954 | 1427 | 600 | 199 | 21.12 | scaffold 617 | 134836 | 136262 | 3 |
14 | LuPIP2-9 | Lus10041397 | Lus_GLEAN_10046457 | 1170 | 798 | 265 | 27.99 | scaffold 280 | 2244255 | 2245424 | 18 |
15 | LuPIP2-10 | Lus10023515 | Lus_GLEAN_10026513 | 2270 | 876 | 291 | 30.75 | scaffold 1216 | 608831 | 611100 | 0 |
16 | LuPIP2-11 | Lus10040399 | Lus_GLEAN_10045377 | 2862 | 921 | 306 | 32.41 | scaffold 86 | 1738335 | 1741196 | 1 |
17 | LuTIP1-1 | Lus10014411 | Lus_GLEAN_10016362 | 991 | 759 | 252 | 26.06 | scaffold 176 | 336786 | 337776 | 4 |
18 | LuTIP1-2 | Lus10023913 | Lus_GLEAN_10026953 | 857 | 759 | 252 | 26.03 | scaffold 177 | 490453 | 491309 | 10 |
19 | LuTIP1-3 | Lus10021510 | Lus_GLEAN_10024223 | 857 | 759 | 252 | 25.78 | scaffold 612 | 780365 | 781221 | 17 |
20 | LuTIP1-4 | Lus10022611 | Lus_GLEAN_10025531 | 867 | 759 | 252 | 25.81 | scaffold 59 | 169658 | 170524 | 13 |
21 | LuTIP1-5 | Lus10005885 | Lus_GLEAN_10006756 | 939 | 759 | 252 | 25.63 | scaffold 1158 | 163531 | 164469 | 1 |
22 | LuTIP1-6 | Lus10040863 | Lus_GLEAN_10045876 | 939 | 759 | 252 | 25.63 | scaffold 156 | 1895985 | 1896923 | 0 |
23 | LuTIP1-7 | Lus10003288 | Lus_GLEAN_10003760 | 939 | 762 | 253 | 26.28 | scaffold 762 | 27405 | 28343 | 0 |
24 | LuTIP2-1 | Lus10004733 | Lus_GLEAN_10005415 | 1353 | 753 | 250 | 25.08 | scaffold 2057 | 85764 | 87116 | 1 |
25 | LuTIP2-2 | Lus10007796 | Lus_GLEAN_10008936 | 1381 | 753 | 250 | 25.09 | scaffold 500 | 33724 | 35104 | 2 |
26 | LuTIP2-3 | Lus10025808 | Lus_GLEAN_10029092 | 958 | 762 | 253 | 25.36 | scaffold 605 | 486981 | 487938 | 3 |
27 | LuTIP2-4 | Lus10038293 | Lus_GLEAN_10043013 | 930 | 747 | 248 | 24.85 | scaffold 28 | 595621 | 596550 | 0 |
28 | LuTIP3-1 | Lus10018256 | Lus_GLEAN_10020665 | 1070 | 771 | 256 | 27.16 | scaffold 163 | 229180 | 230249 | 20 |
29 | LuTIP3-2 | Lus10040652 | Lus_GLEAN_10045655 | 1413 | 771 | 256 | 27.30 | scaffold 156 | 876812 | 878224 | 17 |
30 | LuTIP3-3 | Lus10036187 | Lus_GLEAN_10040713 | 1275 | 774 | 257 | 27.35 | scaffold 27 | 73940 | 75214 | 91 |
31 | LuTIP3-4 | Lus10038324 | Lus_GLEAN_10043045 | 1387 | 774 | 257 | 27.37 | scaffold 28 | 715833 | 717219 | 80 |
32 | LuTIP4-1 | Lus10037895 | Lus_GLEAN_10042572 | 1769 | 744 | 247 | 25.79 | scaffold 475 | 241334 | 243102 | 5 |
33 | LuTIP5-1 | Lus10031735 | Lus_GLEAN_10035685 | 706 | 498 | 165 | 16.81 | scaffold 783 | 450857 | 451562 | 0 |
34 | LuNIP1-1 | Lus10035999 | Lus_GLEAN_10040510 | 1008 | 798 | 265 | 28.47 | scaffold 76 | 651477 | 652484 | 0 |
35 | LuNIP1-2 | Lus10029274 | Lus_GLEAN_10033012 | 1680 | 816 | 271 | 28.98 | scaffold 360 | 400672 | 402351 | 0 |
36 | LuNIP1-3 | Lus10025744 | Lus_GLEAN_10029024 | 974 | 879 | 292 | 30.88 | scaffold 605 | 223796 | 224769 | 0 |
37 | LuNIP1-4 | Lus10035918 | Lus_GLEAN_10040427 | 972 | 879 | 292 | 30.95 | scaffold 76 | 270421 | 271392 | 0 |
38 | LuNIP1-5 | Lus10020929 | Lus_GLEAN_10023548 | 1987 | 909 | 302 | 32.16 | scaffold 711 | 673760 | 675746 | 0 |
39 | LuNIP1-6 | Lus10033447 | Lus_GLEAN_10037660 | 2053 | 687 | 228 | 24.50 | scaffold 701 | 17606 | 19658 | 0 |
40 | LuNIP3-1 | Lus10021935 | Lus_GLEAN_10024751 | 1074 | 636 | 211 | 22.27 | scaffold 164 | 655059 | 656132 | 0 |
41 | LuNIP3-2 | Lus10041222 | Lus_GLEAN_10046267 | 1264 | 888 | 295 | 31.09 | scaffold 280 | 1494684 | 1495947 | 0 |
42 | LuNIP3-3 | Lus10010153 | Lus_GLEAN_10011538 | 3588 | 909 | 302 | 31.40 | scaffold 587 | 43706 | 47293 | 0 |
43 | LuNIP3-4 | Lus10017358 | Lus_GLEAN_10019645 | 2893 | 912 | 303 | 31.35 | scaffold 511 | 252242 | 255134 | 0 |
44 | LuNIP3-5 | Lus10033268 | Lus_GLEAN_10037463 | 6670 | 915 | 304 | 31.38 | scaffold 488 | 326045 | 332714 | 1 |
45 | LuNIP3-6 | Lus10024066 | Lus_GLEAN_10027115 | 1843 | 894 | 297 | 30.76 | scaffold 353 | 358591 | 360433 | 0 |
46 | LuNIP3-7 | Lus10041674 | Lus_GLEAN_10046750 | 1319 | 564 | 187 | 19.46 | scaffold 272 | 1210252 | 1211570 | 1 |
47 | LuSIP1-1 | Lus10030046 | Lus_GLEAN_10033849 | 735 | 735 | 244 | 25.64 | scaffold 416 | 1226731 | 1227465 | 3 |
48 | LuSIP1-2 | Lus10035281 | Lus_GLEAN_10039745 | 735 | 735 | 244 | 25.74 | scaffold 151 | 29774 | 30508 | 0 |
49 | LuXIP1-1 | Lus10042385 | Lus_GLEAN_10047501 | 1166 | 801 | 266 | 27.86 | scaffold 123 | 1931033 | 1932198 | 11 |
50 | LuXIP1-2 | Lus10007568 | Lus_GLEAN_10008664 | 4304 | 945 | 314 | 32.64 | scaffold 259 | 161730 | 166033 | 0 |
51 | LuXIP2-1 | Lus10042375 | Lus_GLEAN_10047491 | 1268 | 924 | 307 | 32.13 | scaffold 123 | 1905398 | 1906665 | 0 |