Table 2 Consensus QTLs for SOC and SPC identified by a high-density linkage map of the KNDH population.
Trait | Consensus QTL | Chromosome | Peak | Range | LOD | Additive | PV (%) | Environment |
---|---|---|---|---|---|---|---|---|
SOC | cqOC-A1 | A01 | 109.41 | 104.00–112.10 | 4.32047 | 0.7173 | 9.59 | 08DL |
cqOC-A2–1 | A02 | 2.30 | 0–7.08 | 2.06–2.34 | −0.41– −0.43 | 1.97–2.22 | 10DL/11DL | |
cqOC-A2-2 | A02 | 107.71 | 105.80–109.20 | 7.69916 | −1.2 | 14.18 | 11GS | |
cqOC-A2–3 | A02 | 116.26 | 113.42–119.10 | 2.30–7.35 | −0.66– −1.16 | 3.43–13.72 | 11GS/10GS/13WH | |
cqOC-A3-1 | A03 | 26.01 | 23.58–28.43 | 2.13–3.37 | −0.52– −0.68 | 4.36–6.00 | 10GS/11GS | |
cqOC-A3-2 | A03 | 32.51 | 31.9–35.8 | 3.38086 | −0.68 | 6.02 | 11GS | |
cqOC-A3-3 | A03 | 122.37 | 120.45–124.29 | 2.28–3.50 | 0.35–0.50 | 2.12–3.13 | 09DL/11DL/12DL | |
cqOC-A3-4 | A03 | 151.81 | 150.70–153.90 | 3.65862 | 0.5785 | 3.44 | 11DL | |
cqOC-A3-5 | A03 | 182.85 | 182.10–183.59 | 2.14–2.45 | 0.37–0.49 | 1.94–2.41 | 11DL/12DL | |
cqOC-A3-6 | A03 | 191.71 | 183.20–195.70 | 3.71721 | 0.6261 | 4.12 | 11DL | |
cqOC-A3-7 | A03 | 204.14 | 200.26–208.03 | 2.14–3.59 | 0.38–0.73 | 2.08–3.76 | 11DL/12DL/13WH/12DL | |
cqOC-A8-1 | A08 | 1.47 | 1.08–1.85 | 2.40–3.48 | 0.40–0.50 | 2.16–3.25 | 12DL/10DL | |
cqOC-A8-2 | A08 | 8.61 | 7.34–9.88 | 2.331–5.32 | 0.38–0.62 | 2.45–5.32 | 10GS/09DL/13DL/10DL/12DL | |
cqOC-A8-3 | A08 | 12.32 | 10.85–13.78 | 2.60–3.72 | 0.58–0.72 | 3.50–6.82 | 11GS/11DL/10GS | |
cqOC-A8-4 | A08 | 18.01 | 17.61–18.41 | 3.45–5.12 | 0.47–0.85 | 3.09–9.36 | 12DL/10DL/11GS/13DL | |
cqOC-A8-5 | A08 | 20.01 | 19.53–20.49 | 2.84–4.83 | 0.37–0.67 | 2.62–5.89 | 10HG/09DL | |
cqOC-A8-6 | A08 | 21.91 | 20.9–23.2 | 3.19–5.34 | 0.59–0.86 | 3.90–9.76 | 12WH/11GS | |
cqOC-A9-1 | A09 | 1.17 | 0.19–2.14 | 2.04–2.69 | 0.36–0.47 | 2.14–2.52 | 10DL/09DL/10HG | |
cqOC-A9–2 | A09 | 23.27 | 21.81–24.73 | 2.19–4.38 | 0.42–0.57 | 2.54–4.18 | 09DL/10DL/10HG/13DL | |
cqOC-A9-3 | A09 | 31.21 | 30.4–32.2 | 4.2098 | 0.532 | 3.88 | 13DL | |
cqOC-A9-4 | A09 | 34.26 | 32.36–36.17 | 2.45–5.35 | 0.41–0.72 | 2.30–5.40 | 11DL/10DL/09DL | |
cqOC-A9-5 | A09 | 67.61 | 67.1–73.1 | 3.22245 | −0.56 | 3.04 | 11DL | |
cqOC-A9-6 | A09 | 95.11 | 94.9–96.7 | 4.50709 | 0.5957 | 4.82 | 12DL | |
cqOC-A9-7 | A09 | 98.41 | 97.23–99.58 | 2.96–4.80 | 0.49–0.68 | 3.06–5.14 | 10DL/12WH | |
cqOC-A9-8 | A09 | 100.71 | 99.9–101.2 | 9.18561 | 0.8578 | 10.05 | 13DL | |
cqOC-A9-9 | A09 | 106.28 | 105.79–106.77 | 2.76–14.19 | 0.64–1.05 | 4.88–14.94 | 09DL/11GS/13DL/12DL/12WH/10GS | |
cqOC-A9-10 | A09 | 112.7 | 111.62–113.79 | 2.87–11.48 | 0.69–0.81 | 3.32–12.41 | 09DL/11DL/12WH/13WH | |
cqOC-A9-11 | A09 | 116.38 | 116.16–116.59 | 7.33–7.66 | 0.64–0.79 | 7.76–8.46 | 13DL/09DL | |
cqOC-A9-12 | A09 | 122.01 | 119.88–124.13 | 2.60–7.21 | 0.66–0.89 | 7.25–8.05 | 10GS/11DL | |
cqOC-A10-1 | A10 | 1.11 | 0–2.59 | 3.64–3.79 | −0.61– −0.64 | 3.39–4.56 | 10DL/09DL | |
cqOC-A10-2 | A10 | 8.71 | 5.8–16.7 | 2.80147 | −0.68 | 2.73 | 11DL | |
cqOC-A10-3 | A10 | 18.03 | 14.35–21.71 | 2.12–3.13 | −0.56– −1.02 | 2.00–4.43 | 11WH/10DL/12DL | |
cqOC-C2-1 | C02 | 84.14 | 82.1–86.18 | 2.60–3.66 | 0.47–0.82 | 2.44–8.68 | 10DL/10GS | |
cqOC-C2–2 | C02 | 91.10 | 89.17–93.04 | 2.95–3.13 | 0.49–0.76 | 2.76–7.48 | 10DL/10GS | |
cqOC-C2-3 | C02 | 100.71 | 97.6–103.1 | 3.69768 | 0.5657 | 3.90 | 10DL | |
cqOC-C2-4 | C02 | 111.08 | 109.45–112.72 | 3.72–2.10 | 0.33–0.53 | 1.95–3.50 | 10DL/09DL | |
cqOC-C3-1 | C03 | 144.94 | 142.23–147.64 | 2.26–2.74 | 0.37–0.4417 | 2.56–2.20 | 12WH/09DL | |
cqOC-C3–2 | C03 | 166.11 | 163.56–168.65 | 2.35–5.26 | 0.48–0.90 | 2.24–12.72 | 10GS/11DL | |
cqOC-C3-3 | C03 | 172.61 | 171.6–173.9 | 4.08611 | 0.8218 | 10.25 | 10GS | |
cqOC-C3–4 | C03 | 300.48 | 299.84–301.12 | 2.69–8.04 | 0.45–1.052 | 2.52–8.12 | 11WH/10HG/12DL/09DL/10DL/11DL/13DL/13WH | |
cqOC-C3-5 | C03 | 309.01 | 308.17–309.86 | 3.08–8.01 | 0.56–0.78 | 3.84–8.03 | 10HG/09DL/13DL | |
cqOC-C3-6 | C03 | 312.33 | 311.35–313.31 | 3.44–7.86 | 0.51–1.20 | 3.21–9.32 | 10DL/13WH/12DL/12WH | |
cqOC-C3-7 | C03 | 318.41 | 314.17–322.64 | 4.59–6.23 | 0.60–1.09 | 4.92–7.86 | 12DL/13DL/13WH | |
cqOC-C5-1 | C05 | 71.99 | 58.2–85.8 | 5.66153 | 0.9311 | 10.86 | 10HG | |
cqOC-C5-2 | C05 | 135.39 | 123.4–136 | 3.82137 | −0.5302 | 3.57 | 10DL | |
cqOC-C5-3 | C05 | 183.19 | 181.38–184.99 | 2.35–10.20 | 0.45–1.00 | 2.86–10.71 | 09DL/11DL/11WH | |
cqOC-C5-4 | C05 | 191.08 | 190.1–192.06 | 2.17–10.64 | 0.37–1.02 | 2.09–11.11 | 11DL/09DL/12WH | |
cqOC-C5-5 | C05 | 220.41 | 219.85–220.98 | 3.83–7.55 | 0.47–0.77 | 3.90–7.64 | 09DL/10DL/11DL/12DL/12WH | |
cqOC-C5-6 | C05 | 230.24 | 229.22–231.26 | 2.42–7.33 | 0.54–0.76 | 2.3–7.43 | 12WH/09DL/10DL/12DL | |
cqOC-C5-7 | C05 | 234.02 | 232.79–235.24 | 2.42–7.33 | 0.50–0.75 | 2.36–7.43 | 10DL/11DL | |
cqOC-C5-8 | C05 | 237.39 | 234.66–240.11 | 3.46–4.34 | 0.53–0.89 | 3.87–5.64 | 13DL/13WH | |
cqOC-C5-9 | C05 | 250.78 | 249.56–252.01 | 4.02–4.37 | 0.53–0.85 | 3.91–5.03 | 13DL/13WH | |
cqOC-C5-10 | C05 | 258.99 | 257.20–259.40 | 4.20546 | 0.9034 | 5.68 | 11WH | |
cqOC-C6-1 | C06 | 23.98 | 15.25–32.72 | 2.66–3.26 | 0.47–0.85 | 2.80–5.03 | 11WH/13DL | |
cqOC-C6-2 | C06 | 149.34 | 147.65–151.02 | 2.29–4.44 | 0.50–0.83 | 2.79–4.32 | 10HG/13DL/13WH | |
cqOC-C6-3 | C06 | 159.20 | 152.6–162.4 | 2.03–3.72 | 0.73–1.48 | 3.01–3.67 | 13DL/12DL/13WH | |
cqOC-C6-4 | C06 | 160.61 | 155.2–169.8 | 3.61–4.08 | 0.60–0.68 | 3.73–4.53 | 10HG/13DL | |
cqOC-C6-5 | C06 | 181.81 | 180.18–183.45 | 2.98–4.35 | 0.52–0.75 | 2.75–4.58 | 13DL/10DL/11DL | |
cqOC-C6-6 | C06 | 188.71 | 187.58–188.96 | 2.39–13.53 | 0.37–4.85 | 3.78–22.24 | 12DL/10GS/09DL/10DL/11DL/13DL | |
cqOC-C6-7 | C06 | 195.61 | 195.2–197 | 5.41 | 0.80 | 5.65 | 11DL | |
cqOC-C6-8 | C06 | 199.11 | 198.88–199.33 | 5.972–6.45 | −2.052–2.12 | 6.17–6.24 | 10DL/12DL | |
cqOC-C6-9 | C06 | 201.31 | 200.4–202.3 | 3.98846 | 0.5657 | 3.64 | 13DL | |
cqOC-C6-10 | C06 | 203.8 | 203.56–204.05 | 3.62–4.98 | −1.99–2.06 | 3.42–4.88 | 11DL/12DL | |
cqOC-C6-11 | C06 | 207.51 | 206.5–211.6 | 3.46766 | 0.5242 | 3.18 | 13DL | |
cqOC-C8 | C08 | 66.15 | 62.66–69.65 | 2.03–3.75 | 0.40–0.79 | 1.92–9.55 | 10GS/10DL | |
cqOC-C9-1 | C09 | 7.39 | 4.08–10.7 | 2.01–6.41 | 0.45–0.68 | 1.98–6.49 | 12WH/10DL/11DL/12DL/09DL | |
cqOC-C9-2 | C09 | 27.11 | 24.6–29.8 | 3.80835 | 0.5388 | 3.70 | 13DL | |
SPC | cqPC-A2 | A02 | 0.01 | 0–1.13 | 2.91–4.83 | 0.25–0.47 | 3.42–10.09 | 11GS/12DL |
cqPC-A3-1 | A03 | 127.01 | 124.80–127.70 | 3.46 | −0.34 | 4.23 | 11WH | |
cqPC-A3-2 | A03 | 131.81 | 131.30–132.30 | 8.7 | −2.12 | 27.48 | 10GS | |
cqPC-A3-3 | A03 | 135.51 | 133.00–139.90 | 4.64 | −0.4 | 5.68 | 11WH | |
cqPC-A3-4 | A03 | 203.51 | 200.58–206.43 | 2.11–7.24 | −0.22–0.58 | 2.65–7.75 | 12DL/13DL/13WH | |
cqPC-A3-5 | A03 | 216.61 | 214.60–216.90 | 6.64 | 1.95 | 20.53 | 10GS | |
cqPC-A4-1 | A04 | 14.59 | 13.00–15.50 | 3.74 | −0.44 | 7.65 | 11GS | |
cqPC-A4-2 | A04 | 55.29 | 52.50–56.40 | 4.7 | −0.53 | 6.19 | 12WH | |
cqPC-A7 | A07 | 97.71 | 95.80–100.90 | 4 | −1.01 | 4.89 | 09DL | |
cqPC-A9-1 | A09 | 1.17 | 0–5.36 | 2.10–4.42 | −0.27–0.32 | 2.53–5.23 | 10DL/12DL | |
cqPC-A9-2 | A09 | 16.4 | 13.47–19.32 | 2.93–4.15 | −0.31–0.53 | 3.82–5.39 | 12WH/10HG/11DL | |
cqPC-A9-3 | A09 | 23.89 | 20.59–27.18 | 2.14–4.20 | −0.26–0.53 | 2.57–5.44 | 10DL/11DL | |
cqPC-A9-4 | A09 | 32.01 | 31.20–33.40 | 4.42 | −0.38 | 5.34 | 11WH | |
cqPC-A9-5 | A09 | 37.31 | 33.4–42.21 | 3.04–4.42 | −0.22–0.38 | 3.01–5.34 | 11WH/13DL | |
cqPC-C1-1 | C01 | 93.79 | 93.05–94.53 | 2.20–4.58 | −0.19–0.39 | 2.18–5.86 | 13DL/10DL | |
cqPC-C1-2 | C01 | 152.19 | 150.05–154.33 | 4.02–8.22 | 0.38–1.66 | 5.20–10.36 | 10HG/09DL/13WH | |
cqPC-C1-3 | C01 | 159.36 | 158.0 0−160.72 | 7.80–4.88 | 0.96–1.59 | 6.26–9.86 | 09DL/13WH | |
cqPC-C1-4 | C01 | 168.01 | 166.00–176.90 | 3.67 | 0.85 | 4.78 | 13WH | |
cqPC-C3-1 | C03 | 287.81 | 287.50–288.40 | 3.44 | −0.35 | 4.48 | 11WH | |
cqPC-C3-2 | C03 | 298.77 | 297.38–300.15 | 7.08–8.27 | −0.39–0.49 | 8.74–8.92 | 11WH/13DL | |
cqPC-C3-3 | C03 | 303.72 | 302.84–304.59 | 3.767–8.02 | −0.35–0.53 | 4.82–9.82 | 10HG/11WH | |
cqPC-C3-4 | C03 | 312.51 | 310.1–319.9 | 3.47 | −0.34 | 4.47 | 10HG | |
cqPC-C5-1 | C05 | 133.89 | 121.3–136 | 4.42 | 1.37 | 5.61 | 10DL | |
cqPC-C5-2 | C05 | 141.96 | 139.89–144.03 | 4.22–5.33 | −0.25–0.32 | 5.42–6.64 | 10DL/09DL | |
cqPC-C5-3 | C05 | 225.49 | 221.80–225.90 | 5 | −0.38 | 6.55 | 11DL | |
cqPC-C5-4 | C05 | 231.59 | 231.20–233.90 | 3.63 | −0.41 | 4.78 | 11DL | |
cqPC-C5-5 | C05 | 237.39 | 234.67–240.1 | 2.48–4.50 | −0.29–0.6 | 5.86–3.34 | 10DL/12DL/13DL | |
cqPC-C5-6 | C05 | 252.21 | 251.54–252.89 | 2.20–7.91 | −0.24–0.88 | 2.91–8.51 | 10DL/12DL/13WH/13DL | |
cqPC-C5-7 | C05 | 260.81 | 260.26–261.37 | 2.68–5.72 | 0.38–1.7758 | 3.41–6.25 | 12DL/13DL/13WH | |
cqPC-C6-1 | C06 | 54.45 | 50.31–58.58 | 2.08–3.17 | −0.27–0.29 | 2.39–4.03 | 12DL/11WH | |
cqPC-C6-2 | C06 | 149.41 | 145.01–153.8 | 2.53–4.39 | −0.24–0.42 | 2.87–5.59 | 10DL/12DL | |
cqPC-C6-3 | C06 | 156.6 | 153.85–159.35 | 2.28–3.24 | −0.34–0.37 | 4.31–5.84 | 10GS/10DL | |
cqPC-C7 | C07 | 109.84 | 105.01–114.66 | 2.21–4.77 | −0.28–0.32 | 2.78–5.68 | 12DL/11WH | |
cqPC-C8 | C08 | 15.39 | 11.3–16.7 | 4.41 | 0.28 | 4.62 | 13DL | |
cqPC-C9-1 | C09 | 2 | 0.0–6.7 | 2.23 | −0.28–0.35 | 2.86–4.45 | 12WH/10DL | |
cqPC-C9-2 | C09 | 8.12 | 6.47–9.78 | 2.055–2.98 | −0.32–0.34 | 3.88–4.18 | 12WH/11GS | |
cqPC-C9-3 | C09 | 70.54 | 69.35–71.72 | 2.31–3.09 | −0.23–0.603 | 2.92–3.22 | 13DL/13WH | |
cqPC-C9-4 | C09 | 77.31 | 74.86–79.75 | 2.41–2.60 | −0.2–0.64 | 2.51–3.28 | 13DL/13WH |