Table 1 Overview of the antibiotics and corresponding resistance genes analyzed by the different tools.
First line drugs | Second line drugs | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Tool | INH | RMP | PZA | EMB | SM | AMK | CPR | KAN | FQ | CFX | OFX | MOX | ETH | LZD | PAS | ||||||||||
ahpC | inhA | kasA | katG | ndh | rpoB | pncA | rpsA | embA | embB | embC | embR | gidB | rpsL | rss | |||||||||||
CASTB | ? | ✓ | ? | ✓ | ? | ✓ | ✓ | ? | ? | ✓ | ? | ? | ? | ✓ | ? | ✓ | |||||||||
KvarQ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | |||||||||||||
Mykr. Pred. TB | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | |||||||||||||||
PhyResSE | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | |||||
TBProfiler | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | |||||
