Figure 1: Median Rank Ratio of True Positive(TP) samples(MedRR).
From: A large-scale benchmark of gene prioritization methods
MedRR(0 ≤ MedRR ≤ 1) for different ranges of GO-terms, i.e. {10–30}, {31–100} and {101–300} was visualized as violin plots, for each tool: MaxLink(blue), NetRank(green), NetWalk(orange) and NetProp(pink), and respective ontology, i.e. Cellular Compartment(CC), Molecular Function(MF), Biological Process(BP). Data points are represented as miniature boxplots within each violin.(a) 100% MedRR. Median Rank of TP samples was normalized by the total length of the full candidate gene list.(b) 10% MedRR. Median rank of TP samples within the top 10% was normalized by the 10% of the length of the candidate gene list.(c) 1% MedRR. Median rank of TP samples within the top 1% was normalized by the 1% of the length of the candidate gene list. Smaller values represent better performance.
