Table 1 Overview of selected SNPs
SNP | Genotypes (n) or reason of exclusion | Gene | Location | Function | Alleles | Alternative name(s) | Inclusion reference | Callrate | HW χ 2 |
|---|---|---|---|---|---|---|---|---|---|
rs6265 | G/G (78); A/G (43); A/A (5) | BDNF | 11p13 | Missense | G/A | Val66Met | Licinio et al.44 | 1.00 | 0.262 |
rs11030101 | A/A (36); T/A (63); T/T (27) | BDNF | 11p13 | UTR-5 | A/T | Licinio et al.44 | 1.00 | 0.109 | |
rs11030102 | C/C (76); G/C (43); G/G (7) | BDNF | 11p13 | NearGene-5 | C/G | Licinio et al.44 | 1.00 | 0.004 | |
rs11030103 | Design failure | BDNF | 11p13 | NearGene-5 | G/A | Licinio et al.44 | / | / | |
rs12273539 | No variation | BDNF | 11p13 | Intronic | T/C | Licinio et al.44 | 1.00 | / | |
rs28722151 | *Suspected* | BDNF | 11p13 | UTR-5 | C/G | Licinio et al.44 | / | / | |
rs56820186 | Design failure | BDNF | 11p13 | UTR-3 | G/T | Licinio et al.44 | / | / | |
rs57083135 | Too little variation | BDNF | 11p13 | NearGene-5 | C/T | Licinio et al.44 | 1.00 | 0.031 | |
rs4633 | C/C (31); C/T (63); T/T (32) | COMT | 22q11.21 | Synonymous | C/T | Diatschenko et al.51 | 1.00 | 0.009 | |
rs4680 | G/G (31); G/A (63); A/A (32) | COMT | 22q11.21 | Missense | G/A | Val158Met | Diatschenko et al.51 | 1.00 | 0.009 |
rs4818 | C/C (41); C/G (64); G/G (21) | COMT | 22q11.21 | Synonymous | C/G | Diatschenko et al.51 | 1.00 | 0.362 | |
rs6267 | No variation | COMT | 22q11.21 | Missense | G/T | Ala72Ser | Diatschenko et al.51 | 1.00 | / |
rs6269 | A/A (39); A/G (65); G/G (22) | COMT | 22q11.21 | NearGene-5 | A/G | Diatschenko et al.51 | 1.00 | 0.479 | |
rs324650 | A/A (36); T/A (68); T/T (22) | CHRM2 | 7q31-q35 | Intronic | A/T | Wang et al.45 | 1.00 | 0.762 | |
rs1824024 | T/T (56); G/T (50); G/G (20) | CHRM2 | 7q31-q35 | Intronic | G/T | Wang et al.45 | 1.00 | 1.649 | |
rs2061174 | T/T (58); T/C (51); C/C (17) | CHRM2 | 7q31-q35 | Intronic | C/T | Wang et al.45 | 1.00 | 0.717 | |
rs6276 | A/A (63); G/A (54); G/G (9) | DRD2 | 11q23 | UTR-3 | A/G | A1385G | Kraschewski et al.46 | 1.00 | 0.188 |
rs6277 | T/T (38); C/T (63); C/C (25) | DRD2 | 11q23 | Synonymous | C/T | C957T | Kraschewski et al.46 | 1.00 | 0.002 |
rs1799732 | Design failure | DRD2 | 11q23 | NearGene-5 | −/C | −141C del | Kraschewski et al.46 | / | / |
rs747302 | Genotyping failure | DRD4 | 11p15.5 | NearGene-5 | C/G | C616G | Ben Zion et al.43 | 0.06 | / |
rs936461 | G/G (58); G/A (53); A/A (15) | DRD4 | 11p15.5 | NearGene-5 | A/G | A809G | Ben Zion et al.43 | 1.00 | 0.048 |
rs1800955 | Too little variation | DRD4 | 11p15.5 | NearGene-5 | C/T | C521T | Ben Zion et al.43 | 0.93 | 5.165 |
rs1799836 | Multivariable SNP | MAO-B | Xp11.23 | Intronic | A/G | B-SNP 13 | Balciuniene et al.47 | / | / |
rs495491 | T/T (65); T/C (48); C/C (13) | OPRM1 | 6q24-q25 | Intronic | C/T | Zhang et al.48 | 1.00 | 0.938 | |
rs609148 | C/C (75); C/T (44); T/T (7) | OPRM1 | 6q24-q25 | Intronic | C/T | Zhang et al.48 | 1.00 | 0.068 | |
rs648893 | T/T (75); C/T (44); C/C (7) | OPRM1 | 6q24-q25 | Intronic | C/T | Zhang et al.48 | 1.00 | 0.068 | |
rs1799971 | Too little variation | OPRM1 | 6q24-q25 | Missense | A/G | Asn40Asp 118 A/G | Zhang et al.48 | 1.00 | 0.004 |
rs3823010 | A/A (83); A/G (37); G/G (6) | OPRM1 | 6q24-q25 | Intronic | A/G | Zhang et al.48 | 1.00 | 0.484 | |
rs563649 | Too little variation | OPRM1 | 6q24-q25 | UTR-5 | A/G | Shabalina et al.49 | 1.00 | 0.038 | |
rs6347 | A/A (68); A/G (49); G/G (9) | SLC6A3 | 5p15.3 | Synonymous | A/G | Ex2+159 C>T | Azzato et al.50 | 1.00 | 0.006 |
rs6350 | Too little variation | SLC6A3 | 5p15.3 | Synonymous | C/T | −3714G>T | Azzato et al.50 | 1.00 | 0.607 |
rs6413429 | Too little variation | SLC6A3 | 5p15.3 | NearGene-5 | G/T | Ex9–55A>G | Azzato et al.50 | 1.00 | 0.853 |
