Table 1 DAVID pathway analysis of differentially expressed genes (q<0.1)

From: Transcriptional targets of the schizophrenia risk gene MIR137

Time

Direction of effect

Enrichment

Annotation cluster description

24 h

Downregulation (183 genes)

3.04

Extracellular matrix

  

2.92

Positive regulation of transcription

  

2.61

Neuron differentiation/projection

  

2.55

Extracellular signaling

 

Upregulation (126 genes)

2.75

Cell cycle

48 h

Downregulation (239 genes)

10.75

Cell cycle

  

7.16

DNA replication

  

4.74

Lumen/membrane enclosed

  

4.42

Cell cycle checkpoint

  

3.31

Chromosome segregation

  

3.04

Mitotic checkpoint/chromosome

  

3.01

Microtubule/spindle organization

  

2.79

DNA binding

 

Upregulation (376 genes)

15.98

Signaling

  

12.07

Transmembrane

  

10.47

Cell adhesion

  

5.87

Plasma membrane

  

4.41

EGF-like

  

4.18

MHC class II/antigen processing

  

3.89

Ion transport/gated channels

  

3.79

Immunoglobulin-like

  

3.63

Calcium ion binding/ion binding

  

3.21

Angiogenesis

  

2.80

Cell junction/synapse

  

2.58

Synaptic transmission

  

2.55

Matrix adhesion/integrins

  

2.52

Extracellular matrix

  1. Abbreviations: EGF, epidermal growth factor; MHC, major histocompatibility complex. Pathway analysis from DAVID. As many annotated pathways contain overlapping genes, DAVID combines such pathways into clusters. Column 4 shows our labels for these clusters. Individual pathways are reported in Supplementary Tables S5a and S6b.