Table 1 Results of an experimental approach to find the best threshold of magnitude (|ALR|) and probability (P) of differentially expressed transcripts between MK801-treated and control animals

From: Expression analysis in a rat psychosis model identifies novel candidate genes validated in a large case–control sample of schizophrenia

|ALR|

P

EXP

Boot 1

Boot 2

Boot 3

FDR (%)

0.585

0.05

74

39

12

14

34.5

0.848

0.05

24

15

5

3

41.7

0.585

0.01

15

11

4

2

50.0

0.848

0.01

3

3

1

0

66.7

0.263

0.005

46

25

12

5

40.2

0.585

0.005

4

3

1

2

50.0

0.848

0.005

1

0

0

0

0.0

  1. Abbreviations: |ALR|, absolute average log2 ratio; Boot 1–3, number of probes surpassing the same criteria in permutation comparisons; EXP, number of probes meeting the |ALR| and P criteria for difference in expression between MK801- and control animals; FDR, false discovery rate.
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