Table 3 Association of differentially expressed genes with schizophrenia in the PGC sample
Gene | Locus (hg19) | No. of markers in PGC_SCZ52 | Best marker in PGC_SCZ52 | P (best marker) | Locus-wide significance a |
|---|---|---|---|---|---|
SF3B1 | Chr2:198236697-198319771 | 318 | rs6434928 | 1.5 × 10−11 | 4.7 × 10−9 |
FOXP1 | Chr3:70983864-71653140 | 3431 | rs7372960 | 1.2 × 10−7 | 0.00043 |
DLG2 | Chr11:83146055-85358314 | 13 630 | rs12294291 | 4.9 × 10−7 | 0.0067 |
VGLL4 | Chr3:11577540-11782242 | 1508 | chr3_11689216_D | 1.4 × 10−5 | 0.021 |
ROBO1 | Chr3:78626387-79837059 | 6944 | rs188858898 | 7.4 × 10−5 | 0.52 |
AKAP5 | Chr14:64912216-64961221 | 253 | rs1980520 | 0.00023 | 0.057 |
PALM2 | Chr9:112383067-112733756 | 2550 | rs78341776 | 0.00033 | 0.83 |
SMAD2 | Chr18:45339465-45477517 | 719 | rs189158823 | 0.00045 | 0.32 |
CAMK4 | Chr5:110539946-110840748 | 1685 | rs117821127 | 0.00099 | 1 |
PRDM5 | Chr4:121595928-121864013 | 1951 | chr4_121723039_I | 0.0010 | 1 |
SMURF2 | Chr17:62520734-62678386 | 644 | rs117024269 | 0.0014 | 0.92 |
CUL5 | Chr11:107859407-107998488 | 753 | chr11_107977411_I | 0.0022 | 1 |
ARSG/WIPI1 | Chr17:66235322-66473653 | 1395 | rs149373128 | 0.0026 | 1 |
SPATA6 | Chr1:48741043-48957880 | 1306 | rs146859685 | 0.0028 | 1 |
TSLP | Chr5:110385777-110433722 | 291 | rs79283270 | 0.011 | 1 |
MIA3 | Chr1:222771443-222861351 | 448 | rs9441835 | 0.011 | 1 |
ALB | Chr4:74249971-74307129 | 278 | rs12651581 | 0.012 | 1 |
ADAMTS1 | Chr21:28188605-28237728 | 350 | rs181607589 | 0.013 | 1 |
KRT18 | Chr12:53322654-53366685 | 270 | rs113120949 | 0.014 | 1 |
FOXJ1 | Chr17:74112414-74157380 | 267 | rs117235875 | 0.014 | 1 |
