Table 1 Top 25 genes in high association with SZ+BP under collective inference.

From: Large-scale interaction effects reveal missing heritability in schizophrenia, bipolar disorder and posttraumatic stress disorder

Rank

Gene

AUC (95% CI)

P-value

Known association a

1

CSMD1

0.600 (0.009)

5 × 10−19

SZ,32, 33, 34, 35 BP36, 37, 38, 39

2

CDH13

0.580 (0.009)

3 × 10−15

SZ,83 ASD,84 ADHD84

3

PTPRD

0.575 (0.009)

3 × 10−14

BP,37 ADHD,85 OCD86

4

RBFOX1

0.574 (0.009)

5 × 10−14

ASD87

5

WWOX

0.570 (0.009)

2 × 10−13

ARCA88

6

CSGALNACT1

0.565 (0.009)

3 × 10−12

SZ40

7

FHIT

0.564 (0.009)

3 × 10−12

SZ89

8

MAGI2

0.561 (0.009)

1 × 10−11

SZ90

9

LSAMP

0.559 (0.009)

3 × 10−11

BP8

10

CNTN4

0.558 (0.009)

5 × 10−11

SZ91

11

DAB1

0.556 (0.009)

1 × 10−10

SZ,92 BP92

12

NPAS3

0.555 (0.009)

1 × 10−10

SZ93

13

LRP1B

0.554 (0.009)

3 × 10−10

SZ94

14

TMEM132D

0.553 (0.009)

4 × 10-10

Anxiety95

15

MACROD2

0.551 (0.009)

8 × 10−10

ASD96

16

ASIC2

0.550 (0.009)

1 × 10−9

Fear in mice97

17

PLCB1

0.548 (0.009)

3 × 10−9

SZ98

18

CTNNA3

0.547 (0.009)

5 × 10−9

SZ83

19

CNTNAP2

0.547 (0.009)

5 × 10−9

SZ99, BP37

20

FRMD4A

0.547 (0.009)

6 × 10−9

AD100

21

ASTN2

0.545 (0.009)

2 × 10−8

SZ,101 ASD,102 ADHD102

22

PCSK5

0.544 (0.009)

2 × 10−8

BP37

23

OPCML

0.544 (0.009)

2 × 10−8

SZ103

24

SORCS2

0.543 (0.009)

3 × 10−8

BP36

25

PTPRT

0.543 (0.009)

3 × 10−8

ASD104

  1. Abbreviations: ADHD, attention-deficit hyperactivity disorder; AD, Alzheimer’s disease; ARCA, autosomal recessive cerebellar ataxia; ASD, autism spectrum disorder; AUC, area under the curve; BP, bipolar disorder; CI, confidence interval; OCD, obsessive-compulsive disorder; SZ, schizophrenia.
  2. aSee Supplementary References.