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Showing 1–5 of 5 results

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EdgeHOG: a method for fine-grained ancestral gene order inference at large scale

A new method to reconstruct ancestral genomes is used to estimate contigs of the last common ancestor of eukaryotes and to infer features such as the age of gene adjacencies and chromosome rearrangements.

Charles Bernard
Yannis Nevers
Christophe Dessimoz
ResearchOpen Access19 Aug 2025
Nature Ecology & Evolution

Volume: 9, P: 1951-1961
Standardized benchmarking in the quest for orthologs

Adrian M Altenhoff
Brigitte Boeckmann
Christophe Dessimoz
ResearchOpen Access04 Apr 2016
Nature Methods

Volume: 13, P: 425-430
Quality assessment of gene repertoire annotations with OMArk

A new tool checks the quality of gene annotations in genome sequences.

Yannis Nevers
Alex Warwick Vesztrocy
Natasha M. Glover
ResearchOpen Access21 Feb 2024
Nature Biotechnology

Volume: 43, P: 124-133
Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree

Phylogenetic trees are generated from sequencing reads without genome assembly or annotation.

David Dylus
Adrian Altenhoff
Christophe Dessimoz
ResearchOpen Access20 Apr 2023
Nature Biotechnology

Volume: 42, P: 139-147
Orthology inference at scale with FastOMA

FastOMA achieves fast and accurate orthology inference, with linear scalability.

Sina Majidian
Yannis Nevers
Christophe Dessimoz
ResearchOpen Access03 Jan 2025
Nature Methods

Volume: 22, P: 269-272