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Showing 1–6 of 6 results
Advanced filters: Author: Adrian E. Platts Clear advanced filters

  • Mathieu Blanchette and colleagues report whole-genome sequencing of three Brassicaceae species, Leavenworthia alabamica, Sisymbrium irio and Aethionema arabicum. They include comparative genomic analysis with 6 additional crucifier genomes, identify and characterize over 90,000 conserved noncoding sequences and provide a map of functional noncoding regions in plant genomes.

    • Annabelle Haudry
    • Adrian E Platts
    • Mathieu Blanchette
    ResearchOpen Access
    Nature Genetics
    Volume: 45, P: 891-898

  • Subgenome dominance is widely observed in allopolyploid species, but the molecular mechanisms remain unclear. Here, the authors generate genome-wide map of accessible chromatin regions (ACRs) in allo-octoploid cultivated strawberry and reveal that dynamics of the ACRs play an important role in its subgenome dominance.

    • Chao Fang
    • Ning Jiang
    • Jiming Jiang
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14

  • Cyprinids fish species contain multiple subgenomes as a result of past duplications. Here, Xu et al. report new genomes of 21 cyprinid fish and conclude that observed subgenome dominance patterns are likely due to both maternal dominance and transposable element densities in each polyploid.

    • Min-Rui-Xuan Xu
    • Zhen-Yang Liao
    • Hua-Hao Zhang
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-19

  • Phenotypic selection analysis is used to estimate the type and strength of selection that acts on more than 15,000 transcripts in rice (Oryza sativa), which provides insight into the adaptive evolutionary role of selection on gene expression.

    • Simon C. Groen
    • Irina Ćalić
    • Michael D. Purugganan
    Research
    Nature
    Volume: 578, P: 572-576

  • A map of fitness consequence scores is generated for 246 rice genome region classes inferred from nine functional genomic and epigenomic datasets, which illuminates the evolutionary forces associated with genome diversity and guides crop breeding.

    • Zoé Joly-Lopez
    • Adrian E. Platts
    • Michael D. Purugganan
    Research
    Nature Plants
    Volume: 6, P: 119-130

  • Stephen Wright, Detlef Weigel and colleagues report the whole-genome sequence of Capsella rubella, a highly selfing crucifer found throughout much of southern and western Europe. They compare mixed-stage flower bud transcriptomes from C. rubella and C. grandiflora, finding a shift in expression of genes associated with flowering phenotypes and providing insights into the transition to selfing.

    • Tanja Slotte
    • Khaled M Hazzouri
    • Stephen I Wright
    ResearchOpen Access
    Nature Genetics
    Volume: 45, P: 831-835