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Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

Eileen Furlong and colleagues report the development and application of BiTS-ChIP (batch isolate tissue specific chromatin immunoprecipitation), in which a tagged nuclear protein is expressed in developing cells of interest. They apply this method to investigate six chromatin markers and RNA Pol II occupancy in mesodermal cells in developing Drosophila embryos and find that histone modifications and Pol II occupancy can predict enhancer activity.

Stefan Bonn
Robert P Zinzen
Eileen E M Furlong
Research08 Jan 2012
Nature Genetics

Volume: 44, P: 148-156
Correction to: Intracellular bacteria are common and taxonomically diverse in cultured and in hospite algal endosymbionts of coral reefs

Justin Maire
Sam K. Girvan
Madeleine J. H. van Oppen
Amendments and Corrections14 Apr 2021
The ISME Journal

Volume: 15, P: 2168-2170
Label-free macrophage phenotype classification using machine learning methods

Tetiana Hourani
Alexis Perez-Gonzalez
Akram Al-Hourani
ResearchOpen Access30 Mar 2023
Scientific Reports

Volume: 13, P: 1-14
Colonization and metabolite profiles of homologous, heterologous and experimentally evolved algal symbionts in the sea anemone Exaiptasia diaphana

Sarah Jane Tsang Min Ching
Wing Yan Chan
Madeleine J. H. van Oppen
ResearchOpen Access30 Mar 2022
ISME Communications

Volume: 2, P: 1-10
Intracellular bacteria are common and taxonomically diverse in cultured and in hospite algal endosymbionts of coral reefs

Justin Maire
Sam K. Girvan
Madeleine J. H. van Oppen
ResearchOpen Access08 Feb 2021
The ISME Journal

Volume: 15, P: 2028-2042
Cell type–specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP

Stefan Bonn
Robert P Zinzen
Eileen E M Furlong
Protocols26 Apr 2012
Nature Protocols

Volume: 7, P: 978-994

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Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

Correction to: Intracellular bacteria are common and taxonomically diverse in cultured and in hospite algal endosymbionts of coral reefs

Label-free macrophage phenotype classification using machine learning methods

Colonization and metabolite profiles of homologous, heterologous and experimentally evolved algal symbionts in the sea anemone Exaiptasia diaphana

Intracellular bacteria are common and taxonomically diverse in cultured and in hospite algal endosymbionts of coral reefs

Cell type–specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP

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Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

Correction to: Intracellular bacteria are common and taxonomically diverse in cultured and in hospite algal endosymbionts of coral reefs

Label-free macrophage phenotype classification using machine learning methods

Colonization and metabolite profiles of homologous, heterologous and experimentally evolved algal symbionts in the sea anemone Exaiptasia diaphana

Intracellular bacteria are common and taxonomically diverse in cultured and in hospite algal endosymbionts of coral reefs

Cell type–specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP

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