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Showing 1–7 of 7 results
Advanced filters: Author: Ashley S. Doane Clear advanced filters
  • This study characterizes the three-dimensional (3D) genome architecture of 15 primary human cancer types from The Cancer Genome Atlas. The analyses identify different archetypes of enhancer usage and enhancer rewiring events due to different classes of mutations and structural variants.

    • Kathryn E. Yost
    • Yanding Zhao
    • Howard Y. Chang
    ResearchOpen Access
    Nature Genetics
    Volume: 57, P: 1189-1200
  • Long non-coding RNAs (lncRNA) constitute a large fraction of human transcriptome, and are reported, individually, for context-specific regulatory functions. Here the authors expand our understanding by providing a systemic, unbiased annotation of lncRNA to establish an atlas of lncRNA landscape during the induction of human humoral immune responses.

    • Xabier Agirre
    • Cem Meydan
    • Ari Melnick
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-16
  • Elemento, Melnick and colleagues examine the chromatin and transcriptional changes that occur during differentiation of human primary B cells into antibody-secreting cells. In naive B cells, the transcription factor OCT2 is preloaded at high-affinity super-enhancer sites present in repressed ‘silent’ chromatin; upon activation, OCAB is recruited to these regions, where it facilitates arrays of OCT2 binding to lower-affinity octamer motifs, leading to active formation of germinal center B cell-specific super-enhancers.

    • Ashley S. Doane
    • Chi-Shuen Chu
    • Olivier Elemento
    Research
    Nature Immunology
    Volume: 22, P: 1327-1340
  • Mutations in histone H1 induce the remodelling of chromatin architecture to a more relaxed state, which leads to malignant transformation through changes in histone modifications and the expression of stem cell genes.

    • Nevin Yusufova
    • Andreas Kloetgen
    • Ari M. Melnick
    Research
    Nature
    Volume: 589, P: 299-305