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Showing 1–50 of 120 results
Advanced filters: Author: Christopher N. Wyatt Clear advanced filters
  • Many properties of polymers are dictated by topology. However, the topology of a macromolecule is typically a static feature after synthesis. Now, an approach to dynamic and transformable macromolecular architecture has been developed. When triggered by an external stimulus, macromolecular topology can be triggered to transform via thermodynamic control.

    • Hao Sun
    • Christopher P. Kabb
    • Brent S. Sumerlin
    Research
    Nature Chemistry
    Volume: 9, P: 817-823
  • Oxidative catalytic depolymerization of polystyrene (PS) can produce benzoic acid, but the annual consumption of benzoic acid is ~40 times lower than PS, so benzoic acid should be converted to higher-volume chemicals for the process to be viable. Here, the authors report a hybrid chemical and biological process that uses PS as feedstock for production of adipic acid, a high-volume co-monomer for nylon 6,6, via benzoic acid.

    • Hyunjin Moon
    • Jason S. DesVeaux
    • Gregg T. Beckham
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • Durable agonism of NPR1 achieved with a novel investigational monoclonal antibody could mirror the positive hemodynamic changes in blood pressure and heart failure identified in humans with lifelong exposure to NPR1 coding variants.

    • Michael E. Dunn
    • Aaron Kithcart
    • Lori Morton
    ResearchOpen Access
    Nature
    Volume: 633, P: 654-661
  • Spider silk is of interest in material science research. Here the authors show that the tight binding of a spider silk protein domain relies on the amino acid methionine, which is abundant in the domain core where it facilitates dynamic shape adaption of the binding interface.

    • Julia C. Heiby
    • Benedikt Goretzki
    • Hannes Neuweiler
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-14
  • The target of rapamycin (Tor) is a Ser/Thr protein kinase that regulates a wide range of anabolic and catabolic processes. Here the authors describe a sub-nanometer cryo-EM structure of a yeast Tor–Lst8 complex and propose an overall topology that differs from that previously suggested for mTORC1.

    • Domagoj Baretić
    • Alex Berndt
    • Roger L. Williams
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-9
  • The relaying of Wnt signals to the cytoplasm requires the formation of signalosomes through the reversible polymerization of Dishevelled (Dvl). Here the authors establish the functional consequences of ubiquitination of the Dvl DIX domain and identify deubiquitinases predicted to promote Dvl polymerization.

    • Julia Madrzak
    • Marc Fiedler
    • Jason W. Chin
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-11
  • The mechanism behind Trim-Away, a protein-depletion approach using E3 ligase, TRIM21 and an antibody against the target, is now clarified, allowing expansion of the toolbox.

    • Jingwei Zeng
    • Ana Filipa Santos
    • Leo C. James
    Research
    Nature Structural & Molecular Biology
    Volume: 28, P: 278-289
  • High-throughput chemical ligand discovery is challenged by false positives. Here, authors introduce a scalable enantioselective affinity-selection mass spectrometry approach for proteome-wide ligand discovery with high sensitivity and selectivity

    • Xiaoyun Wang
    • Jianxian Sun
    • Levon Halabelian
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-10
  • A cryo-electron microscopy structure of the yeast pheromone receptor Ste2, a class D G-protein-coupled receptor, in its active state reveals that Ste2 is a homodimer that couples to two G proteins.

    • Vaithish Velazhahan
    • Ning Ma
    • Christopher G. Tate
    Research
    Nature
    Volume: 589, P: 148-153
  • Here the authors use mRNA display to discover peptide inhibitors of BamA, an essential factor that catalyzes the membrane insertion of bacterial outer membrane proteins. They show that three peptides are antibacterial and inhibit BamA activity by a unique mechanism.

    • Morgan E. Walker
    • Wei Zhu
    • Scott S. Walker
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • Nitrospira inopinata and probably most other comammox microorganisms can grow on the non-conventional substrate guanidine as the sole source of energy, reductant and nitrogen.

    • Marton Palatinszky
    • Craig W. Herbold
    • Michael Wagner
    ResearchOpen Access
    Nature
    Volume: 633, P: 646-653
  • Structural and thermodynamic characterization of the interaction between the intrinsically disordered HBV protein preS1 and the human adaptor protein γ2-EAR indicates that the viral protein imitates host cell interaction motifs to gain access to the cellular trafficking system.

    • Maike C Jürgens
    • Judit Vörös
    • Neil Ferguson
    Research
    Nature Chemical Biology
    Volume: 9, P: 540-547
  • The development of IDH variant inhibitors is a breakthrough as it is the first time metabolism has been successfully targeted by small molecule drugs in cancer. Here the authors report studies on resistance to the pioneer drug ivosidenib leading to identification of inhibitors retaining activity.

    • Raphael Reinbold
    • Ingvild C. Hvinden
    • Christopher J. Schofield
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-12
  • Eph receptor tyrosine kinases and their ephrin ligands mediate cell-cell communication. Here, the authors assess the structure and dynamics of the EphA2 intracellular region and uncover complex effects of phosphorylation within the linker region between EphA2 kinase and SAM domains.

    • Bernhard C. Lechtenberg
    • Marina P. Gehring
    • Elena B. Pasquale
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-16
  • A new design for vaccines consisting of reorienting the viral glycoprotein in an ‘upside-down’ configuration broadens immune responses to diverse influenza subtypes and serves as a proof of concept for designing a universal flu vaccine.

    • Duo Xu
    • Joshua J. Carter
    • Peter S. Kim
    ResearchOpen Access
    Nature Chemical Biology
    Volume: 20, P: 1012-1021
  • Controlling nanoscale interfaces is key for ensuring stable plasmonic and catalytic function yet remains difficult to achieve under operando conditions. Now it has been shown that transient Au–Cl adlayers function as redox-active Au(I) intermediates, modulating interfacial electrostatics. This modulation stabilizes gold nanogaps and directs ligand rebinding, thereby enabling reproducible regeneration of subnanometre architectures.

    • Sarah May Sibug-Torres
    • Marika Niihori
    • Jeremy J. Baumberg
    ResearchOpen Access
    Nature Chemistry
    Volume: 18, P: 294-301
  • CtIP helps maintain genomic stability by promoting DNA double-strand-break repair. Structural and biophysical analyses now show that the N terminus of human CtIP forms a tetrameric structure that is required for resection of broken DNA ends to permit their repair by homologous recombination.

    • Owen R Davies
    • Josep V Forment
    • Luca Pellegrini
    Research
    Nature Structural & Molecular Biology
    Volume: 22, P: 150-157
  • Sialidases are glycoside hydrolases that cleave sialosides. Here the authors define the 3-D structure, alone and in complex with products and inhibitors, of the CAZy family GH156 sialidase, EnvSia156, showing it displays a catalytical (β/α) 8-barrel domain distinct from other sialidases and allowing description of its inverting catalytic mechanism.

    • Pedro Bule
    • Léa Chuzel
    • Gideon J. Davies
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-11
  • Actin normally polymerizes into filaments in a cooperative manner, with nucleation and elongation phases. Skillman et al. show that actin from the protozoan parasite Toxoplasma gondiipolymerizes in an isodesmic manner, without any evidence of nucleation, resulting in filaments that are very short and unstable.

    • Kristen M. Skillman
    • Christopher I. Ma
    • L. David Sibley
    Research
    Nature Communications
    Volume: 4, P: 1-8
  • Genome-wide association studies (GWAS) have improved our understanding of the genetic basis of lung adenocarcinoma but known susceptibility variants explain only a small fraction of the familial risk. Here, the authors perform a two-stage GWAS and report 12 novel genetic loci associated with lung adenocarcinoma in East Asians.

    • Jianxin Shi
    • Kouya Shiraishi
    • Qing Lan
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-17
  • Light-oxygen-voltage receptors sense blue light through the photochemical generation of a covalent adduct between a flavin-nucleotide chromophore and a strictly conserved cysteine residue. Here, the authors show that these proteins can react to light even when devoid of the adduct-forming cysteine.

    • Estella F. Yee
    • Ralph P. Diensthuber
    • Brian R. Crane
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-10
  • Nanoparticles are a promising approach to increase immunogenicity of protein antigens for vaccines. Here, Brouwer et al. design self-assembling, two-component protein NPs that present native-like SOSIP trimers of HIV envelope protein and determine immunogenicity in a small animal model.

    • Philip J. M. Brouwer
    • Aleksandar Antanasijevic
    • Rogier W. Sanders
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-17
  • The small molecule DNMDP acts as a velcrin by inducing complex formation between phosphodiesterase PDE3A and SLFN12, which kills cancer cells that express sufficient levels of both proteins. Here, the authors present the cryo-EM structure of the DNMDP-stabilized PDE3A-SLFN12 complex and show that SLFN12 is an RNase. PDE3A binding increases SLFN12 RNase activity, and SLFN12 RNase activity is required for DNMDP-mediated cancer cell killing.

    • Colin W. Garvie
    • Xiaoyun Wu
    • Heidi Greulich
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-16
  • A connectome of the right optic lobe from a male fruitfly is presented together with an extensive collection of genetic drivers matched to a comprehensive neuron-type catalogue.

    • Aljoscha Nern
    • Frank Loesche
    • Michael B. Reiser
    ResearchOpen Access
    Nature
    Volume: 641, P: 1225-1237
  • Implant infection is the most common mode of joint replacement failure with serious complications. Here, the authors report on the in vivo application of a prophylactic coating technology that can incorporate a range of antibiotics and be applied in the operating room prior to implantation.

    • Weixian Xi
    • Vishal Hegde
    • Tatiana Segura
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-15
  • Glucocorticoid-induced tumor necrosis factor receptor-related protein (GITR) and GITR ligand (GITRL) regulate immune cell activities, including anti-tumor immune responses. Structures and visualization of human and mouse GITR–GITRL complexes offer insight into the architecture of higher-order membrane assemblies, and their signaling.

    • Feng Wang
    • Bryant Chau
    • Pavel Strop
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-9
  • Carbon isotopic analysis reveals global biogeographic traits in shark trophic interactions, and sheds light on the diverse foraging behaviour of sharks.

    • Christopher S. Bird
    • Ana Veríssimo
    • Clive N. Trueman
    Research
    Nature Ecology & Evolution
    Volume: 2, P: 299-305
  • The promoter variant rs35705950 confers a gain of function to the MUC5B gene and is the dominant risk factor for idiopathic pulmonary fibrosis. Here the authors show that mice overexpressing Muc5b in distal airspaces show impaired mucociliary clearance and increased susceptibility to bleomycin-induced lung fibrosis, and that both characteristics are reduced by treatment with a mucolytic agent.

    • Laura A. Hancock
    • Corinne E. Hennessy
    • David A. Schwartz
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-10
  • Lysosomal integral membrane protein-2 (LIMP-2) is a glucocerebrosidase receptor, which is linked to kidney failure and other diseases. Here the authors show that LIMP-2 is also a phospholipid receptor and present the lipid-bound structure of the LIMP-2 luminal domain dimer and discuss its lipid trafficking mechanism.

    • Karen S. Conrad
    • Ting-Wen Cheng
    • Michael D. Ehlers
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-13
  • A key hypothesis for the evolution of division of labour in social insects is that a shared set of genes – a genetic toolkit - regulates reproductive castes across species. Here, the authors analyze brain transcriptomes from nine species of social wasps to identify the factors that shape this toolkit.

    • Christopher Douglas Robert Wyatt
    • Michael Andrew Bentley
    • Seirian Sumner
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-16
  • Jiang et al. developed a computational method to design repeat proteins with multiple structured loops that are buttressed by extensive hydrogen bond networks. The designs were further functionalized into high-affinity peptide-binding proteins.

    • Hanlun Jiang
    • Kevin M. Jude
    • David Baker
    ResearchOpen Access
    Nature Chemical Biology
    Volume: 20, P: 974-980
  • Schief and colleagues show that germline-targeting epitope scaffolds can elicit responses from rare broadly neutralizing antibody precursor B cells with predefined binding specificities and genetic features.

    • Torben Schiffner
    • Ivy Phung
    • William R. Schief
    ResearchOpen Access
    Nature Immunology
    Volume: 25, P: 1073-1082
  • An interactive structure-based approach was used to improve a vaccine antigen against respiratory syncytium virus (RSV), thus leading to immunogens with higher stability that elicit higher neutralizing titers in mice.

    • M Gordon Joyce
    • Baoshan Zhang
    • Peter D Kwong
    Research
    Nature Structural & Molecular Biology
    Volume: 23, P: 811-820
  • Meprin α is a proteolytic regulator of the extracellular matrix that forms enormous oligomeric filaments of unknown purpose. Here, the authors determine by cryo-EM the structural basis of the meprin supercoiled filament and further characterise a small molecule inhibitor bound to its active site.

    • Charles Bayly-Jones
    • Christopher J. Lupton
    • James C. Whisstock
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-14
  • The bispecific IgG1-like CoV-X2 prevents SARS-CoV-2 spike binding to ACE2, neutralizes SARS-CoV-2 and its variants of concern, protects against disease in a mouse model, whereas the parental monoclonal antibodies generate viral escape.

    • Raoul De Gasparo
    • Mattia Pedotti
    • Luca Varani
    Research
    Nature
    Volume: 593, P: 424-428
  • Eliciting broadly neutralizing antibodies (bnAbs) is a primary HIV vaccine goal, but available immunogens expose epitopes for development of non-nAbs. Here, the authors use computational and structure-guided design to develop improved native-like envelope trimers and analyze Ab response in animal models.

    • Daniel W. Kulp
    • Jon M. Steichen
    • William R. Schief
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-14
  • The HUSH complex plays a key role in controlling transcription of viruses and transposable elements. Here, the authors define the biochemical basis of HUSH assembly and show that the TASOR subunit contains a pseudo-PARP domain critical for HUSH-dependent transgene repression and H3K9me3 deposition over targets genome wide.

    • Christopher H. Douse
    • Iva A. Tchasovnikarova
    • Yorgo Modis
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • In this study the authors identify a possible link between the gene FAM222A and brain atrophy. The protein it encodes is found to accumulate in plaques seen in Alzheimer’s disease, and functional analysis suggests it interacts with amyloid-beta.

    • Tingxiang Yan
    • Jingjing Liang
    • Xinglong Wang
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • A hyper-stable de novo protein mimic of interleukin-2 computationally designed to not interact with a regulatory T-cell specific receptor subunit has improved therapeutic activity in mouse models of melanoma and colon cancer.

    • Daniel-Adriano Silva
    • Shawn Yu
    • David Baker
    Research
    Nature
    Volume: 565, P: 186-191
  • Phosphonate modifications can be present on microbial cell surfaces. Here the authors perform bioinformatics analyses and observe a widespread occurrence of nucleotidyltransferase-encoding genes in bacterial phosphonate biosynthesis and functionally characterize two of the identified phosphonate specific cytidylyltransferases (PntCs) and determine the crystal structure of T. denticola PntC.

    • Kyle Rice
    • Kissa Batul
    • Geoff P. Horsman
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-12
  • Chronic infection with SARS-CoV-2 leads to the emergence of viral variants that show reduced susceptibility to neutralizing antibodies in an immunosuppressed individual treated with convalescent plasma.

    • Steven A. Kemp
    • Dami A. Collier
    • Ravindra K. Gupta
    Research
    Nature
    Volume: 592, P: 277-282