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Showing 1–5 of 5 results
Advanced filters: Author: Claudia Cattoglio Clear advanced filters
  • Micro-C and nascent transcript profiling in mouse embryonic stem cells shows that enhancer–promoter interactions are robust to acute depletion of CTCF, cohesin, WAPL or YY1. Live-cell, single-molecule imaging shows that cohesin depletion reduces transcription factor binding to chromatin.

    • Tsung-Han S. Hsieh
    • Claudia Cattoglio
    • Robert Tjian
    ResearchOpen Access
    Nature Genetics
    Volume: 54, P: 1919-1932
  • Live-cell single-molecule imaging of pioneer transcription factors revealed a ‘confined target search’ mechanism where they alternate between fast free diffusion in the nucleus and slower confined diffusion within compacted chromatin domains, leading to efficient pioneering on closed targets.

    • Zuhui Wang
    • Bo Wang
    • Wulan Deng
    Research
    Nature Structural & Molecular Biology
    Volume: 32, P: 125-136
  • Single-particle tracking and mathematical modeling methods reveal the searching mechanism of CTCF for its cognate sites on DNA. An RNA-binding region in CTCF mediates its trapping in small zones and increases its target search efficiency.

    • Anders S. Hansen
    • Assaf Amitai
    • Xavier Darzacq
    Research
    Nature Chemical Biology
    Volume: 16, P: 257-266
  • Adverse events stemming from the use of retroviral vectors in humans has prompted the search for methods predicting the fate and biological consequences of gene-modified cells after vector insertion. Methods of integration site analysis, such as linear amplification-mediated PCR (LAM-PCR), rely on use of restriction enzymes and identify only a fraction of all genomic integrants. This report describes a non–restriction enzyme–based LAM-PCR technique that provides comprehensive, unbiased integration site analysis.

    • Richard Gabriel
    • Ralph Eckenberg
    • Manfred Schmidt
    Research
    Nature Medicine
    Volume: 15, P: 1431-1436