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The APOE-ε4 allele is the strongest genetic risk factor for late-onset Alzheimer’s disease, but it is not deterministic. Here, the authors show that common genetic variation changes how APOE-ε4 influences cognition.

Entangled local states can be made capable of violating Bell inequalities via nonlocality activation. Typical theoretical approaches require processing many copies of the original state and performing joint measurements on the ensemble. Here, instead, the authors experimentally demonstrate how to do so using a single copy of the state, broadcasting it to two spatially separated parties within a three-node network.

For a scenario of two separated but entangled observers, inequalities are derived from three fundamental assumptions. An experiment shows that these inequalities can be violated if quantum evolution is controllable on the scale of an observer.

Here, the authors look at present day and medieval genome samples from Northern France to piece together demographic history and population structure across Brittany and the Loire basin.

Yakut communities, with Trans-Baikal admixture during the Mongol expansion, preserved genomic diversity and oral microbiomes despite the Russian conquest, which introduced cereals, pathogens and Christianity, whereas marital practices preserved low consanguinity except in one late case of traditional shamanism.

Optimizing study design is critical for increasing standardized effect sizes and replicability, and the features that increase replicability in cross-sectional and longitudinal brain-wide association studies are explored.

Zeng et al. analyzed cfDNA methylation and fragmentomic data from 1,294 patient plasma samples across 14 major cancer types to present a comprehensive landscape of pancancer and cancer-specific cell-free DNA methylation and fragmentomic features.

Noise-induced synchronization is known in classical systems and has recently been proposed in quantum many-body settings. Here, the authors experimentally demonstrate stable and entangled synchronized oscillations at the ends of a superconducting qubit chain by applying Gaussian noise to a single qubit.

As we are at the beginning of the second century of quantum physics, we asked four researchers to share their views on new research directions trying to answer old, yet still open, questions in the foundations of quantum theory.

Wastewater-based surveillance tends to focus on specific pathogens. Here, the authors mapped the wastewater virome from 62 cities worldwide to identify over 2,500 viruses, revealing city-specific virome fingerprints and showing that wastewater metagenomics enables early detection of emerging viruses.

A manufacturable platform for quantum computing with photons is introduced and a set of monolithically integrated silicon-photonics-based modules is benchmarked, demonstrating dual-rail photonic qubits with performance close to thresholds required for operation.

Analyses of 2,658 whole genomes across 38 types of cancer identify the contribution of non-coding point mutations and structural variants to driving cancer.

The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

Fusion gates are common operations in photonic quantum information platforms, where they are employed to create entanglement. Here, the authors propose a quantum computation scheme where the same measurements used to generate entanglement can also be used to achieve fault-tolerance leading to an increased tolerance to errors.

Examination of demographic age trajectories for species from a wide range of taxonomic groups shows that these species have very diverse life-history patterns; mortality and reproduction vary greatly with age for both long- and short-lived species, and the relationships between ageing, mortality and reproduction are clearly complex.

Microstructured air-core optical fibre provides unprecedented low-loss transmission of light signals over a broad wavelength window.

Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

The authors present SVclone, a computational method for inferring the cancer cell fraction of structural variants from whole-genome sequencing data.

Multi-omics datasets pose major challenges to data interpretation and hypothesis generation owing to their high-dimensional molecular profiles. Here, the authors develop ActivePathways method, which uses data fusion techniques for integrative pathway analysis of multi-omics data and candidate gene discovery.

With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

Using well-calibrated statistical methods the authors jointly analyze Undiagnosed Diseases Network genomes, identifying known and novel disease genes. Software is publicly available to support future cross-cohort rare disease discovery efforts.

The Pacific sector of Antarctica has experienced substantial warming in the past 30 years. Observations of global surface temperatures and atmospheric circulation data show that the warming in continental West Antarctica is linked to sea surface temperature changes in the tropical Pacific Ocean.

Polycystin-2 (PC2) is an ion channel commonly found mutated in autosomal dominant polycystic kidney disease. Here Arhatte et al. identify transmembrane protein 33 (TMEM33) as a regulator of PC2 function at the endoplasmic reticulum, and find that deletion of TMEM33 protects mice from acute kidney injury.

Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

Climate-induced changes in phenology have the potential to push trophic relationships out of synchrony, but evidence of this phenomenon is scant, particularly in the Arctic. A long-term (1996–2009), spatially replicated data set from high-Arctic Greenland now indicates a climate-associated shortening of the flowering season, and a concomitant decline in flower visitor abundance.

The conversion of auditory and vestibular stimuli into electrical signals is initiated by force transmitted to a mechanotransduction channel through the tip link. Here authors show that a single tip-link bond is more mechanically stable relative to classic cadherins, and that the double stranded tip-link connection is stabilized by single strand rebinding facilitated by strong cis-dimerization domains.

A market-based nitrogen insurance lets maize farmers cut excess fertilizer use without profit risk, as shown in simulations across 4,270 Illinois fields over 30 years and 33 nitrogen rates.

Whole-genome sequencing data for 2,778 cancer samples from 2,658 unique donors across 38 cancer types is used to reconstruct the evolutionary history of cancer, revealing that driver mutations can precede diagnosis by several years to decades.

How adhesive forces are transduced and integrated into biochemical signals at focal adhesions (FAs) is poorly understood. Here authors show that force- FAK signaling coupling coordinates cell migration and tissue-scale forces to promote microtissue repair.

Calculating the secret key rate for a given quantum key distribution protocol is challenging. Here the authors develop a numerical approach for calculating the key rate for arbitrary discrete-variable QKD protocols, which could lead to automated security analysis of realistic systems.

A pan-cancer genomic analysis reports the effects of structural variations on chromatin domains (TADs). Most TAD disruptions do not result in appreciable changes in expression of nearby genes.

Cancers evolve as they progress under differing selective pressures. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, the authors present the method TrackSig the estimates evolutionary trajectories of somatic mutational processes from single bulk tumour data.

An on-chip platform with in situ adjustable interfacial properties, using a microelectromechanical system, provides multi-degree-of-freedom control of two-dimensional materials, including twisting and pressurizing.