Nature Search

Author Correction: Sequential formation and resolution of multiple rosettes drive embryo remodelling after implantation

Neophytos Christodoulou
Christos Kyprianou
Magdalena Zernicka-Goetz
Amendments and Corrections19 Nov 2018
Nature Cell Biology

Volume: 20, P: 1434
Author Correction: Molecular architecture of lineage allocation and tissue organization in early mouse embryo

Guangdun Peng
Shengbao Suo
Naihe Jing
Amendments and Corrections16 Sept 2020
Nature

Volume: 586, P: E7
Author Correction: Molecular architecture of lineage allocation and tissue organization in early mouse embryo

Guangdun Peng
Shengbao Suo
Naihe Jing
Amendments and Corrections03 Jan 2020
Nature

Volume: 577, P: E6
High-resolution mapping of single cells in spatial context

CMAP is a method that maps large-scale individual cells to their precise spatial locations by integrating single-cell and spatial transcriptomics data through a divide-and-conquer strategy, supporting diverse data types and mapping scenarios.

Jincan Ke
Jian Xu
Shengbao Suo
ResearchOpen Access15 Jul 2025
Nature Communications

Volume: 16, P: 1-21
Three-dimensional molecular architecture of mouse organogenesis

Qu et al. present a detailed three-dimensional spatial transcriptome atlas of all major organs in the mouse embryo at E13.5, providing a better understanding of organ development and cellular interactions during mammalian development.

Fangfang Qu
Wenjia Li
Guangdun Peng
ResearchOpen Access31 Jul 2023
Nature Communications

Volume: 14, P: 1-18
Simultaneous profiling of spatial gene expression and chromatin accessibility during mouse brain development

MISAR-seq combines spatial-ATAC-seq and RNA-seq for spatial profiling of both chromatin accessibility and gene expression, as demonstrated in the developing mouse brain.

Fuqing Jiang
Xin Zhou
Guangdun Peng
Research25 May 2023
Nature Methods

Volume: 20, P: 1048-1057
Molecular architecture of lineage allocation and tissue organization in early mouse embryo

Spatially resolved transcriptomes of cell populations at defined positions in the early mouse embryo reveal molecular bases of lineage specification and tissue patterning.

Guangdun Peng
Shengbao Suo
Naihe Jing
Research07 Aug 2019
Nature

Volume: 572, P: 528-532
Author Correction: Lung regeneration by multipotent stem cells residing at the bronchioalveolar-duct junction

Qiaozhen Liu
Kuo Liu
Bin Zhou
Amendments and Corrections07 Mar 2019
Nature Genetics

Volume: 51, P: 766
Sequential formation and resolution of multiple rosettes drive embryo remodelling after implantation

Using time-lapse microscopy and transcriptome analysis of the post-implantation mouse embryo, Christodoulou et al. show that cavity fusion occurs through the formation and polarized resolution of multiple, multicellular three-dimensional rosettes.

Neophytos Christodoulou
Christos Kyprianou
Magdalena Zernicka-Goetz
Research15 Oct 2018
Nature Cell Biology

Volume: 20, P: 1278-1289
Lung regeneration by multipotent stem cells residing at the bronchioalveolar-duct junction

Fate-mapping and clonal analysis show that bronchioalveolar stem cells (BASCs) become activated and respond distinctly to different lung injuries and differentiate into multiple cell types. Single-cell RNA-seq analysis identifies new BASC markers.

Qiaozhen Liu
Kuo Liu
Bin Zhou
Research18 Feb 2019
Nature Genetics

Volume: 51, P: 728-738
Time space and single-cell resolved tissue lineage trajectories and laterality of body plan at gastrulation

Gastrulation entails a series of events that are highly coordinated in space and time. Here they construct a spatiotemporal molecular atlas of lineage trajectories in the gastrulating mouse embryo by mapping single cells to spatial coordinates in the germ layers with reference to positional data in the transcriptome.

Ran Wang
Xianfa Yang
Naihe Jing
ResearchOpen Access14 Sept 2023
Nature Communications

Volume: 14, P: 1-18
A secreted microRNA disrupts autophagy in distinct tissues of Caenorhabditis elegans upon ageing

Decreased autophagy is a hallmark of ageing, but its inter-tissue regulation is poorly understood. Here, Zhou et al. identify mir-83 in C. elegans, which is transported across tissues and suppresses autophagy, contributing to age-related decline.

Yifei Zhou
Xueqing Wang
Yidong Shen
ResearchOpen Access23 Oct 2019
Nature Communications

Volume: 10, P: 1-14
Histone deacetylation promotes mouse neural induction by restricting Nodal-dependent mesendoderm fate

Differentiation of embryonic stem cells (ESCs) into neural lineages involves epigenetic changes. Here the authors show that transient histone deacetylation promotes the transition from epiblast stem cells to neural progenitors during mouse ESC differentiation and show that this effect is partly mediated by the restriction of Nodal signalling by histone deacetylase 1.

Pingyu Liu
Xiaoyang Dou
Naihe Jing
Research23 Apr 2015
Nature Communications

Volume: 6, P: 1-14
Systematic comparison of sequencing-based spatial transcriptomic methods

This analysis presents a systematic comparison of 11 sequencing-based spatial transcriptomics methods using well-characterized references, which offers insights into performance variations in spatial transcriptomic techniques.

Yue You
Yuting Fu
Luyi Tian
ResearchOpen Access04 Jul 2024
Nature Methods

Volume: 21, P: 1743-1754
Author Correction: Hormones induce the formation of luminal-derived basal cells in the mammary gland

Wenqian Song
Ran Wang
Yi Arial Zeng
Amendments and Corrections26 Feb 2019
Cell Research

Volume: 29, P: 338
Hormones induce the formation of luminal-derived basal cells in the mammary gland

Wenqian Song
Ran Wang
Yi Arial Zeng
Research10 Jan 2019
Cell Research

Volume: 29, P: 206-220
Distinct enhancer signatures in the mouse gastrula delineate progressive cell fate continuum during embryo development

Xianfa Yang
Boqiang Hu
Naihe Jing
Research07 Oct 2019
Cell Research

Volume: 29, P: 911-926
Spatial transcriptomic analysis of cryosectioned tissue samples with Geo-seq

Geo-seq combines laser capture microdissection and single-cell RNA-seq technology to enable transcriptome analysis of small quantities of cells from defined geographical locations.

Jun Chen
Shengbao Suo
Naihe Jing
Protocols16 Feb 2017
Nature Protocols

Volume: 12, P: 566-580
Profiling spatial gene activity in marmoset embryos

Guangdun Peng
Patrick P. L. Tam
Research Highlights20 Jul 2022
Cell Research

Volume: 32, P: 873-874
Silencing of developmental genes by H3K27me3 and DNA methylation reflects the discrepant plasticity of embryonic and extraembryonic lineages

Xianfa Yang
Boqiang Hu
Naihe Jing
Correspondence20 Feb 2018
Cell Research

Volume: 28, P: 593-596
CRISPR-Cas9-mediated genome editing in one blastomere of two-cell embryos reveals a novel Tet3 function in regulating neocortical development

Lingbo Wang
Min-Yin Li
Jinsong Li
Research21 Apr 2017
Cell Research

Volume: 27, P: 815-829

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Author Correction: Sequential formation and resolution of multiple rosettes drive embryo remodelling after implantation

Author Correction: Molecular architecture of lineage allocation and tissue organization in early mouse embryo

Author Correction: Molecular architecture of lineage allocation and tissue organization in early mouse embryo

High-resolution mapping of single cells in spatial context

Three-dimensional molecular architecture of mouse organogenesis

Simultaneous profiling of spatial gene expression and chromatin accessibility during mouse brain development

Molecular architecture of lineage allocation and tissue organization in early mouse embryo

Author Correction: Lung regeneration by multipotent stem cells residing at the bronchioalveolar-duct junction

Sequential formation and resolution of multiple rosettes drive embryo remodelling after implantation

Lung regeneration by multipotent stem cells residing at the bronchioalveolar-duct junction

Time space and single-cell resolved tissue lineage trajectories and laterality of body plan at gastrulation

A secreted microRNA disrupts autophagy in distinct tissues of Caenorhabditis elegans upon ageing

Histone deacetylation promotes mouse neural induction by restricting Nodal-dependent mesendoderm fate

Systematic comparison of sequencing-based spatial transcriptomic methods

Author Correction: Hormones induce the formation of luminal-derived basal cells in the mammary gland

Hormones induce the formation of luminal-derived basal cells in the mammary gland

Distinct enhancer signatures in the mouse gastrula delineate progressive cell fate continuum during embryo development

Spatial transcriptomic analysis of cryosectioned tissue samples with Geo-seq

Profiling spatial gene activity in marmoset embryos

Silencing of developmental genes by H3K27me3 and DNA methylation reflects the discrepant plasticity of embryonic and extraembryonic lineages

CRISPR-Cas9-mediated genome editing in one blastomere of two-cell embryos reveals a novel Tet3 function in regulating neocortical development

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