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Showing 1–50 of 112 results
Advanced filters: Author: Jake Rogers Clear advanced filters
  • A new study captures nearly the full repertoire of primate natural behaviour and reveals that highly distributed cortical activity maintains multifaceted dynamic social relationships.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 25, P: 373
  • Functional integration of large-scale brain networks in humans mediates emotional arousal-enhanced memory encoding.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 27, P: 4
  • To flexibly perform multiple tasks, non-human primates compose appropriate behavioural responses by sharing subspaces of neural activity from which representations of task-related sensory, motor and cognitive information can be reused.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 27, P: 153
  • An analysis of 24,202 critical cases of COVID-19 identifies potentially druggable targets in inflammatory signalling (JAK1), monocyte–macrophage activation and endothelial permeability (PDE4A), immunometabolism (SLC2A5 and AK5), and host factors required for viral entry and replication (TMPRSS2 and RAB2A).

    • Erola Pairo-Castineira
    • Konrad Rawlik
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 617, P: 764-768
  • Prior learning, rather than decision-making-related processes, primarily shapes the subjective experience-based weighting humans assign to potential losses and gains during choices involving monetary risk-taking.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 26, P: 519
    • Jake Rogers
    Research Highlights
    Nature Chemical Biology
    Volume: 18, P: 1164
  • Dynorphin regulates motivated behaviour in mice via κ-opioid receptor signalling in a nucleus accumbens–ventral pallidum (VP) disinhibitory circuit that increases activity of VP cholinergic neurons projecting to the basolateral amygdala.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 26, P: 311
  • Time-series observations from the JWST of the transiting exoplanet WASP-39b show gaseous water in the planet’s atmosphere and place an upper limit on the abundance of methane.

    • Eva-Maria Ahrer
    • Kevin B. Stevenson
    • Xi Zhang
    ResearchOpen Access
    Nature
    Volume: 614, P: 653-658
  • The medium-resolution transmission spectrum of the exoplanet WASP-39b, described using observations from the Near Infrared Spectrograph G395H grating aboard JWST, shows significant absorption from CO2 and H2O and detection of SO2.

    • Lili Alderson
    • Hannah R. Wakeford
    • Xi Zhang
    ResearchOpen Access
    Nature
    Volume: 614, P: 664-669
  • The transmission spectrum of the exoplanet WASP-39b is obtained using observations from the Single-Object Slitless Spectroscopy mode of the Near Infrared Imager and Slitless Spectrograph instrument aboard the JWST.

    • Adina D. Feinstein
    • Michael Radica
    • Xi Zhang
    ResearchOpen Access
    Nature
    Volume: 614, P: 670-675
  • A study in humans reveals that the hippocampus encodes relevant task variables in abstract format during inferential reasoning, which enables the generalization needed for such complex cognition.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 25, P: 645
  • A new modelling method developed in male Drosophila melanogaster maps how populations of neurons transform visual stimuli into courtship behaviours without recording neural activity.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 25, P: 516
  • Research Highlights
    Nature Structural & Molecular Biology
    Volume: 29, P: 1038
  • During red blood cell infection, malaria parasites export hundreds of proteins that remodel the host cell surface. Cowman and colleagues identify a putative protein translocator complex spatially associated with exported proteins, revealing the cellular domains involved in protein export.

    • David T. Riglar
    • Kelly L. Rogers
    • Alan F. Cowman
    ResearchOpen Access
    Nature Communications
    Volume: 4, P: 1-13
  • A juvenile hormone-degrading enzyme localized in the insect equivalent of the blood–brain barrier governs which social role, forager or soldier, worker carpenter ants fulfil.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 24, P: 654
  • A mark test of self-recognition in mice reveals that self-responding ventral CA1 neurons underlie mirror-induced self-directed behaviour and are shaped by social experience with conspecifics.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 25, P: 79
  • Analysis of whole-genome sequencing data across 2,658 tumors spanning 38 cancer types shows that chromothripsis is pervasive, with a frequency of more than 50% in several cancer types, contributing to oncogene amplification, gene inactivation and cancer genome evolution.

    • Isidro Cortés-Ciriano
    • Jake June-Koo Lee
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 331-341
  • Analyses of 2,658 whole genomes across 38 types of cancer identify the contribution of non-coding point mutations and structural variants to driving cancer.

    • Esther Rheinbay
    • Morten Muhlig Nielsen
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 102-111
  • In somatic cells the mechanisms maintaining the chromosome ends are normally inactivated; however, cancer cells can re-activate these pathways to support continuous growth. Here, the authors characterize the telomeric landscapes across tumour types and identify genomic alterations associated with different telomere maintenance mechanisms.

    • Lina Sieverling
    • Chen Hong
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • Whole-genome sequencing data from more than 2,500 cancers of 38 tumour types reveal 16 signatures that can be used to classify somatic structural variants, highlighting the diversity of genomic rearrangements in cancer.

    • Yilong Li
    • Nicola D. Roberts
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 112-121
  • In this study the authors consider the structural variants (SVs) present within cancer cases of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium. They report hundreds of genes, including known cancer-associated genes for which the nearby presence of a SV breakpoint is associated with altered expression.

    • Yiqun Zhang
    • Fengju Chen
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • Thalamic activity onto a sparse population of premotor neurons in the zebra finch song nucleus initiates syllable onset, enabling the orchestration of song production.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 24, P: 267
  • Oxytocin-releasing projections from the paraventricular nucleus enhance top-down nociceptive regulation in rats by altering the excitation–inhibition balance in the prefrontal cortex.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 24, P: 332
  • Ketamine-induced dissociated states in mice result from the suppression and activation of cortical pyramidal neuron populations that are active and silent during wakefulness, respectively.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 24, P: 60
  • Human and animal studies reveal a neurobiological pathway that connects polygenic risks and behavioural changes that are shared between schizophrenia and bipolar mood disorder.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 24, P: 2
  • Core features of the language network in the brain are consistent across languages and language families.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 23, P: 521
  • Mapping promoter–enhancer interactions reveals that increased diversity of cell types in the vertebrate CNS coincides with the evolutionary expansion of complexity in noncoding regions of the genome

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 23, P: 2-3
  • After establishing a novel operant conditioning paradigm that enables mice to report their interoceptive hunger state (fasted or sated), the authors investigated the hypothalamic neural circuitry that underpins these internal states using optogenetics and chemogenetics.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 22, P: 590-591
  • The authors present SVclone, a computational method for inferring the cancer cell fraction of structural variants from whole-genome sequencing data.

    • Marek Cmero
    • Ke Yuan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • Cancers evolve as they progress under differing selective pressures. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, the authors present the method TrackSig the estimates evolutionary trajectories of somatic mutational processes from single bulk tumour data.

    • Yulia Rubanova
    • Ruian Shi
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Population activity of hippocampal place cells in mice flexibly encodes reward-relative representations of experience, which can amplify behaviorally relevant sequences of events in memory.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 26, P: 517
  • A global network of researchers was formed to investigate the role of human genetics in SARS-CoV-2 infection and COVID-19 severity; this paper reports 13 genome-wide significant loci and potentially actionable mechanisms in response to infection.

    • Mari E. K. Niemi
    • Juha Karjalainen
    • Chloe Donohue
    ResearchOpen Access
    Nature
    Volume: 600, P: 472-477
  • Movement-related dopamine neuronal activity in the tail of the striatum encodes a value-free action prediction error that reinforces state-action associations, biasing mice to repeat past actions.

    • Jake Rogers
    Research Highlights
    Nature Reviews Neuroscience
    Volume: 26, P: 377
  • Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

    • Matthew A. Reyna
    • David Haan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17
  • There’s an emerging body of evidence to show how biological sex impacts cancer incidence, treatment and underlying biology. Here, using a large pan-cancer dataset, the authors further highlight how sex differences shape the cancer genome.

    • Constance H. Li
    • Stephenie D. Prokopec
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-24
  • With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

    • Matthew H. Bailey
    • William U. Meyerson
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-27
  • The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

    • Lauri A. Aaltonen
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 82-93
  • Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

    • Claudia Calabrese
    • Natalie R. Davidson
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 129-136
  • Viral pathogen load in cancer genomes is estimated through analysis of sequencing data from 2,656 tumors across 35 cancer types using multiple pathogen-detection pipelines, identifying viruses in 382 genomic and 68 transcriptome datasets.

    • Marc Zapatka
    • Ivan Borozan
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 320-330
  • Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

    • Shimin Shuai
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Whole-genome sequencing data for 2,778 cancer samples from 2,658 unique donors across 38 cancer types is used to reconstruct the evolutionary history of cancer, revealing that driver mutations can precede diagnosis by several years to decades.

    • Moritz Gerstung
    • Clemency Jolly
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 122-128