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Showing 201–250 of 845 results
Advanced filters: Author: Jason K. W. Lee Clear advanced filters
  • On wounding, scar formation in mammals arises causing no hair follicle regeneration, but it is unclear if scarring precludes regeneration. Here, the authors show that if Sonic hedgehog signaling is activated in the wound, an inductive dermal niche forms, enabling regeneration and hair follicle formation.

    • Chae Ho Lim
    • Qi Sun
    • Mayumi Ito
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-13
  • Previous studies identified an association between the 2q35 locus and breast cancer. Here, the authors show that a SNP at 2q35, rs4442975, is associated with oestrogen receptor positive disease and suggest that this effect is mediated through the downregulation of a known breast cancer gene, IGFBP5.

    • Maya Ghoussaini
    • Stacey L. Edwards
    • Anna De Fazio
    Research
    Nature Communications
    Volume: 5, P: 1-12
  • Epigenetic changes during the differentiation of bone-resorbing cells have important implications in bone remodelling. Here the authors target this pathway with I-BET151, an inhibitor of bromo and extra-terminal proteins that inhibits expression of the MYC-NFAT axis and suppresses bone loss in multiple mouse models.

    • Kyung-Hyun Park-Min
    • Elisha Lim
    • Lionel B Ivashkiv
    Research
    Nature Communications
    Volume: 5, P: 1-9
  • Alum coupled to protein immunogens via site-specific phosphoserine-containing linkers enhances long-lived B cell responses and can selectively direct antibodies toward protective neutralizing epitopes.

    • Tyson J. Moyer
    • Yu Kato
    • Darrell J. Irvine
    Research
    Nature Medicine
    Volume: 26, P: 430-440
  • The heterogeneity of IDH1/2 wild-type glioblastoma limits its prognosis and therapy. Here, the authors show a binary stratification, based on quantitative proteomic analysis of samples from patients with glioblastoma, with different prognosis and therapeutic vulnerabilities.

    • Sejin Oh
    • Jeonghun Yeom
    • Hyun Seok Kim
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • A high-quality bonobo genome assembly provides insights into incomplete lineage sorting in hominids and its relevance to gene evolution and the genetic relationship among living hominids.

    • Yafei Mao
    • Claudia R. Catacchio
    • Evan E. Eichler
    ResearchOpen Access
    Nature
    Volume: 594, P: 77-81
  • Protein immunofluorescence imaging and affinity purification–mass spectrometry are combined to create a unified map of human cell architecture across scales, which the authors call the multi-scale integrated cell (MuSIC).

    • Yue Qin
    • Edward L. Huttlin
    • Trey Ideker
    Research
    Nature
    Volume: 600, P: 536-542
  • A deep-learning-based strategy is used to design artificial luciferases that catalyse the oxidative chemiluminescence of diphenylterazine with high substrate specificity and catalytic efficiency.

    • Andy Hsien-Wei Yeh
    • Christoffer Norn
    • David Baker
    ResearchOpen Access
    Nature
    Volume: 614, P: 774-780
  • The availability of labelled training data is one of the practical obstacles towards wide application of machine learning models in medicine. Here the authors develop a weakly supervised deep learning model for the classification of aortic malformations using unlabelled cardiac MRI sequences from the UK biobank.

    • Jason A. Fries
    • Paroma Varma
    • James R. Priest
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-10
  • Cytotoxic T lymphocyte (CTL)-based immunotherapies can induce tumor regressions by targeting HLA class I-bound tumor-associated peptides. Here, the authors identified a peptide derived from Vestigial-like 1 (VGLL1) as a shared, potentially therapeutic CTL target expressed by multiple cancer types.

    • Sherille D. Bradley
    • Amjad H. Talukder
    • Gregory Lizée
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • In chemical-genetic and lipidomics analyses, the clinical candidate oncology drug tegavivint induced an unconventional form of nonapoptotic cell death that required the lipid metabolic enzyme trans-2,3-enoyl-CoA reductase.

    • Logan Leak
    • Ziwei Wang
    • Scott J. Dixon
    Research
    Nature Chemical Biology
    Volume: 21, P: 1873-1884
  • Progressive diseases tend to be heterogeneous in their underlying aetiology mechanism, disease manifestation, and disease time course. Here, Young and colleagues devise a computational method to account for both phenotypic heterogeneity and temporal heterogeneity, and demonstrate it using two neurodegenerative disease cohorts.

    • Alexandra L Young
    • Razvan V Marinescu
    • Ansgar J Furst
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-16
  • This study reports on self-aggregating injectable microcrystals for administering long-acting drug implants via low-profile needles, a key factor in patient adoption. Microcrystal self-aggregation is engineered through a solvent exchange process to form depots with minimal polymer excipient, demonstrating enhanced long-term release of a model contraceptive drug in rodents.

    • Vivian R. Feig
    • Sanghyun Park
    • Giovanni Traverso
    ResearchOpen Access
    Nature Chemical Engineering
    Volume: 2, P: 209-219
  • Extracellular proteasomes are found in the Arabidopsis apoplastic fluid and shown to participate in biotic defense by proteolytically digesting pathogen proteins into microbe-associated molecular pattern epitopes specifically recognized by the pathogen-triggered innate immune response system.

    • Hana Zand Karimi
    • Kuo-En Chen
    • Richard D. Vierstra
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • Targeting solid tumours by chimeric antigen receptor (CAR) T cells require strategies that improve trafficking and effector function of these cells in the immunologically hostile cancer microenvironment. Here, authors show that CAR T cells engineered with incorporation of the CD28 transmembrane domain to the 4-1BB costimulatory domain and a membrane-bound form of IL-12 can achieve efficient anti-tumour activity and promote systemic disease targeting via regional T cell delivery in multi-metastatic disease models.

    • Eric Hee Jun Lee
    • John P. Murad
    • Saul J. Priceman
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-16
  • Whether mucinous ovarian carcinoma (MOC) arises from cells at the ovary or from metastases from other primary sites is an unanswered question. Here, Cheasley et al perform a genetic analysis of the disease, showing that MOC arises at the ovary.

    • Dane Cheasley
    • Matthew J. Wakefield
    • Kylie L. Gorringe
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-11
  • An exome-wide association study of six smoking phenotypes in up to 749,459 individuals identifies associations of rare coding variants in CHRNB2 that may reduce the likelihood of smoking.

    • Veera M. Rajagopal
    • Kyoko Watanabe
    • Giovanni Coppola
    ResearchOpen Access
    Nature Genetics
    Volume: 55, P: 1138-1148
  • Ruggeri et al. find in a study of 61 countries that temporal discounting patterns are globally generalizable. Worse financial environments, greater inequality and high inflation are associated with extreme or inconsistent long-term decisions.

    • Kai Ruggeri
    • Amma Panin
    • Eduardo García-Garzon
    ResearchOpen Access
    Nature Human Behaviour
    Volume: 6, P: 1386-1397
  • The heterogeneity of whole-exome sequencing (WES) data generation methods presents a challenge to joint analysis. Here, the authors present a bioinformatics strategy to generate high-quality data from processing diversely generated WES samples, as applied in the Alzheimer’s Disease Sequencing Project.

    • Yuk Yee Leung
    • Adam C. Naj
    • Li-San Wang
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • Analyses of the proportions of individuals who have completed key levels of schooling across all low- and middle-income countries from 2000 to 2017 reveal inequalities across countries as well as within populations.

    • Nicholas Graetz
    • Lauren Woyczynski
    • Simon I. Hay
    ResearchOpen Access
    Nature
    Volume: 577, P: 235-238
  • Cryo-EM is used to visualize the SARS-CoV-2 RTC bound to each of the natural NTPs as well as remdesivir triphosphate (RDV-TP) in states poised for incorporation, explaining the interactions required for NTP recognition and RDV-TP selectivity.

    • Brandon F. Malone
    • Jason K. Perry
    • Seth A. Darst
    Research
    Nature
    Volume: 614, P: 781-787
  • Here, the authors analyse the distance between the body of an antibody and a protein antigen denoted as the Antibody-Framework-to-Antigen Distance (AFAD) for about 2000 non-redundant antibody-protein antigen complexes in the Protein Data Bank. They observe that antibodies with exceptionally long AFADs were all broad HIV-1-neutralizing antibodies that targeted densely glycosylated regions on the HIV-1-envelope trimer. The connection between long AFAD and dense glycan was further validated by the cryo-EM structure of antibody 2909 recognizing a glycan hole and by glycan shielding analyses based on molecular dynamics simulations.

    • Myungjin Lee
    • Anita Changela
    • Peter D. Kwong
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-10
  • HORNET, a method that uses unsupervised machine learning and deep neural networks to analyse atomic force microscopy data enables structural determination of RNA molecules in multiple conformations.

    • Maximilia F. S. Degenhardt
    • Hermann F. Degenhardt
    • Yun-Xing Wang
    ResearchOpen Access
    Nature
    Volume: 637, P: 1234-1243
  • An extensive map of human DNase I hypersensitive sites, markers of regulatory DNA, in 125 diverse cell and tissue types is described; integration of this information with other ENCODE-generated data sets identifies new relationships between chromatin accessibility, transcription, DNA methylation and regulatory factor occupancy patterns.

    • Robert E. Thurman
    • Eric Rynes
    • John A. Stamatoyannopoulos
    ResearchOpen Access
    Nature
    Volume: 489, P: 75-82
  • Though wireless near-field communication (NFC) technologies that connect wearable sensors for health monitoring have been reported, the short range of NFC readers limits sensor functionality. Here, the authors report a wireless and battery-free body sensor network with near-field-enabled clothing.

    • Rongzhou Lin
    • Han-Joon Kim
    • John S. Ho
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • When an extrasolar planet passes in front of its star (transits), its radius can be measured from the decrease in starlight and its orbital period from the time between transits. This study reports Kepler spacecraft observations of a single Sun-like star that reveal six transiting planets, five with orbital periods between 10 and 47 days plus a sixth one with a longer period. The five inner planets are among the smallest for which mass and size have both been measured, and these measurements imply substantial envelopes of light gases.

    • Jack J. Lissauer
    • Daniel C. Fabrycky
    • Jason H. Steffen
    Research
    Nature
    Volume: 470, P: 53-58
  • There is a need for methods that allow the analysis of single-cell long-read sequencing data without depending on known barcode lists or short-read sequencing. Here, the authors develop scNanoGPS, a tool that can independently deconvolute long reads into single cells and single molecules, and apply it on tumour and cell line data.

    • Cheng-Kai Shiau
    • Lina Lu
    • Ruli Gao
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-12
  • In an interim analysis of a phase 1/2 trial, a heterologous prime boost vaccine comprised of a chimpanzee adenovirus and self-amplifying mRNA that encodes neoantigens derived from common oncogenic driver mutations in combination with immune checkpoint blockade was safe and elicited neoantigen-specific T cell responses in patients with advanced solid tumors.

    • Amy R. Rappaport
    • Chrisann Kyi
    • Karin Jooss
    Research
    Nature Medicine
    Volume: 30, P: 1013-1022
  • High-resolution subnational mapping of child growth failure indicators for 105 low- and middle-income countries between 2000 and 2017 shows that, despite considerable progress, substantial geographical inequalities still exist in some countries.

    • Damaris K. Kinyoki
    • Aaron E. Osgood-Zimmerman
    • Simon I. Hay
    ResearchOpen Access
    Nature
    Volume: 577, P: 231-234
  • High-throughput experimentation (HTE) has great utility for chemical synthesis. However, robust interpretation of high-throughput data remains a challenge. Now, a flexible analyser has been developed on the basis of a machine learning-statistical analysis framework, which can reveal hidden chemical insights from historical HTE data of varying scopes, sizes and biases.

    • Emma King-Smith
    • Simon Berritt
    • Alpha A. Lee
    ResearchOpen Access
    Nature Chemistry
    Volume: 16, P: 633-643
  • In this study, Aggarwal and colleagues perform prospective sequencing of SARS-CoV-2 isolates derived from asymptomatic student screening and symptomatic testing of students and staff at the University of Cambridge. They identify important factors that contributed to within university transmission and onward spread into the wider community.

    • Dinesh Aggarwal
    • Ben Warne
    • Ian G. Goodfellow
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-16