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Showing 1–50 of 127 results
Advanced filters: Author: Jimmy Z. Liu Clear advanced filters
  • The Taiwan Precision Medicine Initiative recruited and genotyped more than half a million Taiwanese participants, almost all of Han Chinese ancestry, and performed comprehensive genomic analyses and developed polygenic risk score prediction models for numerous health conditions.

    • Hung-Hsin Chen
    • Chien-Hsiun Chen
    • Cathy S. J. Fann
    ResearchOpen Access
    Nature
    P: 1-10
  • A study reports whole-genome sequences for 490,640 participants from the UK Biobank and combines these data with phenotypic data to provide new insights into the relationship between human variation and sequence variation.

    • Keren Carss
    • Bjarni V. Halldorsson
    • Ole Schulz-Trieglaff
    ResearchOpen Access
    Nature
    Volume: 645, P: 692-701
  • DNA nanostructures with interlocked topologies will tend to display different behaviour to the linear counterparts. Here, the authors show a DNA catenane that is inactive for rolling circle amplification but is activated upon cleavage of one ring, and exploit this for the development of a biosensing system.

    • Meng Liu
    • Qiang Zhang
    • Yingfu Li
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-7
  • A genome-wide association study including over 76,000 individuals with schizophrenia and over 243,000 control individuals identifies common variant associations at 287 genomic loci, and further fine-mapping analyses highlight the importance of genes involved in synaptic processes.

    • Vassily Trubetskoy
    • Antonio F. Pardiñas
    • Jim van Os
    Research
    Nature
    Volume: 604, P: 502-508
  • Stratified medicine promises to tailor treatment for individual patients, however it remains a major challenge to leverage genetic risk data to aid patient stratification. Here the authors introduce an approach to stratify individuals based on the aggregated impact of their genetic risk factor profiles on tissue-specific gene expression levels, and highlight its ability to identify biologically meaningful and clinically actionable patient subgroups, supporting the notion of different patient ‘biotypes’ characterized by partially distinct disease mechanisms.

    • Lucia Trastulla
    • Georgii Dolgalev
    • Michael J. Ziller
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-28
  • Ovarian and endometrial cancers with CCNE1-amplification are often resistant to standard treatment. Here, the authors identify that CCNE1-amplified gynecological cancer is sensitive to combined PKMYT1 and ATR inhibition via CDK1 activation, resulting in premature mitosis, DNA damage, cell apoptosis and reduced tumour growth and metastasis.

    • Haineng Xu
    • Erin George
    • Fiona Simpkins
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19
  • Genome-wide meta-analysis with individuals of East Asian or European ancestry identifies 176 loci associated with schizophrenia. Despite consistent genetic effects across populations, polygenic risk models trained in one population have reduced performance in the other population.

    • Max Lam
    • Chia-Yen Chen
    • Hailiang Huang
    Research
    Nature Genetics
    Volume: 51, P: 1670-1678
  • Meta-analysis of genome-wide association studies on Alzheimer’s disease and related dementias identifies new loci and enables generation of a new genetic risk score associated with the risk of future Alzheimer’s disease and dementia.

    • Céline Bellenguez
    • Fahri Küçükali
    • Jean-Charles Lambert
    ResearchOpen Access
    Nature Genetics
    Volume: 54, P: 412-436
  • Dissolved inorganic carbon can be a limiting factor for organic nitrogen production in rivers, and so bedrock composition may influence river chemistry, according to geochemical analysis of rivers in Asia and statistical analysis of global datasets.

    • Hongkai Qi
    • Yi Liu
    • Jianping Gan
    ResearchOpen Access
    Nature Geoscience
    Volume: 18, P: 402-409
  • Clinically significant genetic variation in Asian populations is under-characterized. Here, the authors show the diversity in prevalence and spectrum of human disease and pharmacogenetic variants in a multi-ethnic Asian population.

    • Sock Hoai Chan
    • Yasmin Bylstra
    • Weng Khong Lim
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-15
  • A genome-wide association study identifies 17 genetic loci that are associated with the risk of myeloproliferative neoplasms (MPNs), and shows that the modulation of haematopoietic stem cell function drives MPN risk.

    • Erik L. Bao
    • Satish K. Nandakumar
    • Vijay G. Sankaran
    Research
    Nature
    Volume: 586, P: 769-775
  • A study of genetic associations identifies 46 new loci associated with alcohol consumption. By assessing their function and potential pleiotropy, the authors suggest genetic mechanisms that are shared with neuropsychiatric disorders, including schizophrenia.

    • Evangelos Evangelou
    • He Gao
    • Paul Elliott
    Research
    Nature Human Behaviour
    Volume: 3, P: 950-961
  • Two-electron water oxidation is an important strategy to generate H2O2 but it often requires carbonate electrolyte that will often limit its further application. Cu₂(OH)₂CO₃ tablet electrode is found to be able to efficiently produce hydrogen peroxide in noncarbonate electrolyte by a crystal OH mediating pathway.

    • Ruilin Wang
    • Hao Luo
    • Zhuofeng Hu
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • Progress in understanding coronary artery disease has been hampered by the inability of current approaches to interrogate the human coronary wall at cellular-level resolution. Here, Liu and colleagues introduce a second-generation form of OCT, called ↘OCT, that provides three-dimensional images of human coronary atherosclerosis at an axial resolution of only 1 ↘m—an order of magnitude greater than that provided by standard OCT systems.

    • Linbo Liu
    • Joseph A Gardecki
    • Guillermo J Tearney
    Research
    Nature Medicine
    Volume: 17, P: 1010-1014
  • Rinse Weersma, Carl Anderson and colleagues report the results of a trans-ancestry association study of inflammatory bowel disease. They implicate 38 new susceptibility loci, and show that the variance explained by each IBD risk locus is consistent across diverse ancestries, with a few notable exceptions.

    • Jimmy Z Liu
    • Suzanne van Sommeren
    • Rinse K Weersma
    Research
    Nature Genetics
    Volume: 47, P: 979-986
  • Studying the contribution of pairs of genes to complex traits has been challenging. Here, the authors combine exome and genotype data with RNAi to screen for genetic interactions between 30 genes identified in lipid GWAS to hint at pairs whose joint modulation may improve lipid-lowering therapies.

    • Magdalena Zimoń
    • Yunfeng Huang
    • Heiko Runz
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-16
  • Many diseases are driven by the insufficient expression of critical genes, but few technologies are capable of rescuing these endogenous protein levels. Here, Cao et al. present an RNA-based technology that boosts protein production from endogenous mRNAs by upregulating their translation.

    • Yang Cao
    • Huachun Liu
    • Bryan C. Dickinson
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-12
  • Structural variations (SV) contribute to inter-individual variability. Here, the authors describe a first-generation multi-ancestry Asian SV catalogue containing 73,035 SVs from 8392 Singaporeans to provide insights into Asian SV diversity.

    • Joanna Hui Juan Tan
    • Zhihui Li
    • Nicolas Bertin
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • In this immunological ancillary study of the PREVAC trial, the authors show that approved Ebola virus vaccines induce memory T-cell responses that persist during the five year follow-up after initial vaccination.

    • Aurélie Wiedemann
    • Edouard Lhomme
    • Huanying Zhou
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • A dataset of the genomes of 363 species from the Bird 10,000 Genomes Project shows increased power to detect shared and lineage-specific variation, demonstrating the importance of phylogenetically diverse taxon sampling in whole-genome sequencing.

    • Shaohong Feng
    • Josefin Stiller
    • Guojie Zhang
    Research
    Nature
    Volume: 587, P: 252-257
  • Claeys and Van den Eynden demonstrate that the genotype-specific binding properties of the Major Histocompatibility Complex (MHC) can predict outcome in melanoma patients treated with immunotherapy. Their results suggest an immunomodulatory role of non-canonical MHC-II presentable neoantigens.

    • Arne Claeys
    • Jimmy Van den Eynden
    ResearchOpen Access
    Communications Medicine
    Volume: 4, P: 1-8
  • A machine learning model for generating crop-specific and spatially explicit NH3 emission factors globally shows that global NH3 emissions in 2018 were lower than previous estimates that did not fully consider fertilizer management practices.

    • Peng Xu
    • Geng Li
    • Benjamin Z. Houlton
    Research
    Nature
    Volume: 626, P: 792-798
  • Despite many common genetic variants being linked to depression, the impact of rare coding variants on depression remains largely unknown. Here, the authors perform a whole-exome sequencing study of depression, providing insights into the rare genetic architecture of depression.

    • Ruoyu Tian
    • Tian Ge
    • Chia-Yen Chen
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • A systematic analysis of lignin biosynthetic genes to quantitatively understand their effect on wood properties is still lacking. Here, the authors integrate transcriptomic, proteomic, fluxomic and phenomic data to quantify the impact of perturbations of transcript abundance on lignin biosynthesis and wood properties.

    • Jack P. Wang
    • Megan L. Matthews
    • Vincent L. Chiang
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-16
  • Analyses of data from high-throughput genomic technologies are challenging given large data dimensionality. Here, Liu and colleagues describe a method called MANCIE (Matrix Analysis and Normalization by Concordant Information Enhancement) that can conduct genomic data normalization and bias correction to detect biologically relevant information.

    • Chongzhi Zang
    • Tao Wang
    • X. Shirley Liu
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-8
  • Temporal multi-omic analysis of tissues from rats undergoing up to eight weeks of endurance exercise training reveals widespread shared, tissue-specific and sex-specific changes, including immune, metabolic, stress response and mitochondrial pathways.

    • David Amar
    • Nicole R. Gay
    • Elena Volpi
    ResearchOpen Access
    Nature
    Volume: 629, P: 174-183
  • Jimmy Liu and colleagues perform genome-wide association by proxy (GWAX) in a large population cohort by replacing cases with their first-degree relatives. They apply GWAX to 12 common diseases and show its utility by identifying new risk loci for Alzheimer's disease, coronary artery disease and type 2 diabetes.

    • Jimmy Z Liu
    • Yaniv Erlich
    • Joseph K Pickrell
    Research
    Nature Genetics
    Volume: 49, P: 325-331
  • There is a genetic component to the risk of severe COVID-19, but the genetic effects are difficult to separate from social constructs that covary with genetic ancestry. To address this, the authors identify determinants of COVID-19 severity using admixture mapping, viral phylodynamics, and host immune and metagenomic sequencing.

    • Victoria N. Parikh
    • Alexander G. Ioannidis
    • Euan A. Ashley
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-10
  • A population-scale map of gene expression in primary human microglia provides a systematic exploration of microglia diversity and how age, sex, pathology, cortical anatomy and common germline genetic variation influence the microglia transcriptome.

    • Adam M. H. Young
    • Natsuhiko Kumasaka
    • Daniel J. Gaffney
    Research
    Nature Genetics
    Volume: 53, P: 861-868
  • Via specific acid etching, the authors report the production of spatially differentiated Bi4Ti3O12 nanosheets to accelerate photogenerated charge transfer and separation for effective water splitting in a one-step excitation system with a solar-to-hydrogen efficiency of 0.1%.

    • Guangri Jia
    • Fusai Sun
    • Jimmy C. Yu
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-10
  • Analysis of rare coding variants in the UK Biobank identifies eight genes associated with adult cognitive function, including KDM5B. Rare and common variant signals overlap and contribute additively to the phenotype.

    • Chia-Yen Chen
    • Ruoyu Tian
    • Heiko Runz
    ResearchOpen Access
    Nature Genetics
    Volume: 55, P: 927-938
  • It is known that exercise influences many human traits, but not which tissues and genes are most important. This study connects transcriptome data collected across 15 tissues during exercise training in rats as part of the Molecular Transducers of Physical Activity Consortium with human data to identify traits with similar tissue specific gene expression signatures to exercise.

    • Nikolai G. Vetr
    • Nicole R. Gay
    • Stephen B. Montgomery
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • This study demonstrates that the burden of protein-truncating variants identified through population-scale exome sequencing impacts how long we live. The authors report four distinct human lifespan genes with roles in cancer and clonal hematopoiesis.

    • Jimmy Z. Liu
    • Chia-Yen Chen
    • Heiko Runz
    ResearchOpen Access
    Nature Aging
    Volume: 2, P: 289-294
  • Acidic conditions present a solution to carbonate formation in CO2 electrolysis but create a selectivity issue through competing H2 evolution. Here, theoretical methods are used to optimize acidity and select Pd–Cu as a selective electrocatalyst for acidic CO2 reduction with negligible carbonate crossover and high single-pass carbon efficiency.

    • Yi Xie
    • Pengfei Ou
    • Edward H. Sargent
    Research
    Nature Catalysis
    Volume: 5, P: 564-570
  • The lack of appropriate models restricts pre-clinical research for nasopharyngeal carcinoma (NPC). Here the authors report the development and characterization of NPC patient-derived xenografts (PDXs), and EBV positive NPC cell line from patient tumor, and suggest their potential use in future NPC research.

    • Weitao Lin
    • Yim Ling Yip
    • Sai Wah Tsao
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-17
  • The influence of X chromosome genetic variation on blood lipids and coronary heart disease (CHD) is not well understood. Here, the authors analyse X chromosome sequencing data across 65,322 multi-ancestry individuals, identifying associations of the Xq23 locus with lipid changes and reduced risk of CHD and diabetes mellitus.

    • Pradeep Natarajan
    • Akhil Pampana
    • Gina M. Peloso
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-14
  • The long noncoding RNA XIST plays a central role in sex-specific gene expression in humans by silencing one of two X chromosomes in female cells. Here the authors show that higher order secondary structure creates the modular domain structure of XIST ribonucleoprotein complex and spatial separation of functions.

    • Zhipeng Lu
    • Jimmy K. Guo
    • Howard Y. Chang
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • Daniel Benjamin, Meike Bartels, Philipp Koellinger and colleagues report a genome-wide association meta-analysis of subjective well-being, depressive symptoms and neuroticism. The study leverages a large sample size together with genetic correlations between the phenotypes to identify, with high confidence, loci associated with each phenotype.

    • Aysu Okbay
    • Bart M L Baselmans
    • David Cesarini
    Research
    Nature Genetics
    Volume: 48, P: 624-633