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Showing 351–399 of 399 results

Advanced filters: Author: John L. Quinn Clear advanced filters

Reproducible molecular networking of untargeted mass spectrometry data using GNPS

Global Natural Product Social Molecular Networking (GNPS) is an online tandem mass spectrometry (MS²) data curation and analysis infrastructure. This protocol describes how to use GNPS to explore uploaded metabolomics data.

Allegra T. Aron
Emily C. Gentry
Pieter C. Dorrestein
Protocols13 May 2020
Nature Protocols

Volume: 15, P: 1954-1991
Genome-wide association analysis of hippocampal volume identifies enrichment of neurogenesis-related pathways

Emrin Horgusluoglu-Moloch
Shannon L. Risacher
Kristin Fargher
ResearchOpen Access10 Oct 2019
Scientific Reports

Volume: 9, P: 1-12
Effect of CLU genetic variants on cerebrospinal fluid and neuroimaging markers in healthy, mild cognitive impairment and Alzheimer’s disease cohorts

Lin Tan
Hui-Fu Wang
Kristin Fargher
ResearchOpen Access27 May 2016
Scientific Reports

Volume: 6, P: 1-12
A semi-mechanism approach based on MRI and proteomics for prediction of conversion from mild cognitive impairment to Alzheimer’s disease

Haochen Liu
Xiaoting Zhou
Kristin Fargher
ResearchOpen Access07 Jun 2016
Scientific Reports

Volume: 6, P: 1-12
A predictive model using the mesoscopic architecture of the living brain to detect Alzheimer’s disease

Inglese et al. develop a predictive model that computes multi-regional statistical morpho-functional mesoscopic traits from T1-weighted magnetic resonance imaging scans. Their model reliably discriminates people with Alzheimer’s disease-related pathologies from those without.

Marianna Inglese
Neva Patel
Eric O. Aboagye
ResearchOpen Access20 Jun 2022
Communications Medicine

Volume: 2, P: 1-16
Applying polygenic risk scoring for psychiatric disorders to a large family with bipolar disorder and major depressive disorder

Simone de Jong et al. examine the balance of common and rare risk for psychiatric disorders in a large family with high incidence of Bipolar Disorder and Major Depressive Disorder. They find that increased polygenic risk over generations could be partially due to assortative mating, which may explain the observation of anticipation in mood disorders.

Simone de Jong
Mateus Jose Abdalla Diniz
Gerome Breen
ResearchOpen Access08 Oct 2018
Communications Biology

Volume: 1, P: 1-10
A Novel Joint Brain Network Analysis Using Longitudinal Alzheimer’s Disease Data

Suprateek Kundu
Joshua Lukemire
Ansgar J. Furst
ResearchOpen Access20 Dec 2019
Scientific Reports

Volume: 9, P: 1-18
Challenges and Opportunities with Causal Discovery Algorithms: Application to Alzheimer’s Pathophysiology

Xinpeng Shen
Sisi Ma
Kristin Fargher
ResearchOpen Access19 Feb 2020
Scientific Reports

Volume: 10, P: 1-12
The impact of PICALM genetic variations on reserve capacity of posterior cingulate in AD continuum

Wei Xu
Hui-Fu Wang
Kristin Fargher
ResearchOpen Access27 Apr 2016
Scientific Reports

Volume: 6, P: 1-11
Early onset of breast cancer in a group of British black women

R L Bowen
S W Duffy
J L Jones
ResearchOpen Access08 Jan 2008
British Journal of Cancer

Volume: 98, P: 277-281
10 CYTOMEGALOVIRUS (CMV) IN PREGNANT ADOLESCENTS AND THEIR OFFSPRING

David J Lang
Selman I Welt
Robert J Thompson Jr.
Research01 Apr 1978
Pediatric Research

Volume: 12, P: 365
In Situ Product Removal as a Tool for Bioprocessing

Amihay Freeman
John M. Woodley
Malcolm D. Lilly
Reviews01 Sept 1993
Bio/Technology

Volume: 11, P: 1007-1012
Single-taxon field measurements of bacterial gene regulation controlling DMSP fate

Vanessa A Varaljay
Julie Robidart
Mary Ann Moran
Research20 Feb 2015
The ISME Journal

Volume: 9, P: 1677-1686
Reference SVA insertion polymorphisms are associated with Parkinson’s Disease progression and differential gene expression

Abigail L. Pfaff
Vivien J. Bubb
Sulev Koks
ResearchOpen Access25 May 2021
npj Parkinson's Disease

Volume: 7, P: 1-9
Pitfalls in assessing stromal tumor infiltrating lymphocytes (sTILs) in breast cancer

Zuzana Kos
Elvire Roblin
Zsuzsanna Bago-Horvath
ResearchOpen Access12 May 2020
npj Breast Cancer

Volume: 6, P: 1-16
Mining Outcome-relevant Brain Imaging Genetic Associations via Three-way Sparse Canonical Correlation Analysis in Alzheimer’s Disease

Xiaoke Hao
Chanxiu Li
Kristin Fargher
ResearchOpen Access14 Mar 2017
Scientific Reports

Volume: 7, P: 1-12
A genome-wide analysis of the response to inhaled β₂-agonists in chronic obstructive pulmonary disease

M Hardin
M H Cho
J Yates
Research27 Oct 2015
The Pharmacogenomics Journal

Volume: 16, P: 326-335
The Chemical Form of Metal Species Released from Corroded Taper Junctions of Hip Implants: Synchrotron Analysis of Patient Tissue

Anna Di Laura
Paul D. Quinn
Alister J. Hart
ResearchOpen Access08 Sept 2017
Scientific Reports

Volume: 7, P: 1-13
Paclitaxel sensitivity in relation to ABCB1 expression, efflux and single nucleotide polymorphisms in ovarian cancer

Bo Gao
Amanda Russell
Anna deFazio
ResearchOpen Access09 May 2014
Scientific Reports

Volume: 4, P: 1-9
NR2A contributes to genesis and propagation of cortical spreading depression in rats

Fan Bu
Ruoxing Du
Minyan Wang
ResearchOpen Access22 Mar 2016
Scientific Reports

Volume: 6, P: 1-9
The promise of anti-angiogenic cancer therapy

M K Oehler
R Bicknell
Comments & OpinionOpen Access20 Jan 2000
British Journal of Cancer

Volume: 82, P: 749-752
Robust Identification of Alzheimer’s Disease subtypes based on cortical atrophy patterns

Jong-Yun Park
Han Kyu Na
Balebail Ashok Raj
ResearchOpen Access09 Mar 2017
Scientific Reports

Volume: 7, P: 1-14
BrainGENIE: The Brain Gene Expression and Network Imputation Engine

Jonathan L. Hess
Thomas P. Quinn
Stephen J. Glatt
ResearchOpen Access22 Mar 2023
Translational Psychiatry

Volume: 13, P: 1-10
The incidence, clinical features, and management of essential infantile esotropia in the United Kingdom. A British Ophthalmology Surveillance Unit (BOSU) study

Damien C. M. Yeo
Ryan Davies
Patrick Watts
Research02 Feb 2024
Eye

Volume: 38, P: 680-686
Analysis of repetitive element expression in the blood and skin of patients with Parkinson’s disease identifies differential expression of satellite elements

Kimberley J. Billingsley
Freddy Lättekivi
Pille Taba
ResearchOpen Access13 Mar 2019
Scientific Reports

Volume: 9, P: 1-9
Multimodal and Multiscale Deep Neural Networks for the Early Diagnosis of Alzheimer’s Disease using structural MR and FDG-PET images

Donghuan Lu
Karteek Popuri
Kristin Fargher
ResearchOpen Access09 Apr 2018
Scientific Reports

Volume: 8, P: 1-13
Expression of the zinc transporter ZnT4 is decreased in the progression from early prostate disease to invasive prostate cancer

Susan M Henshall
Daniel E H Afar
Robert L Sutherland
Research04 Sept 2003
Oncogene

Volume: 22, P: 6005-6012
Ex vivo culture of intact human patient derived pancreatic tumour tissue

John Kokkinos
George Sharbeen
Phoebe A. Phillips
ResearchOpen Access21 Jan 2021
Scientific Reports

Volume: 11, P: 1-15
SCORPION is a stacking-based ensemble learning framework for accurate prediction of phage virion proteins

Saeed Ahmad
Phasit Charoenkwan
Watshara Shoombuatong
ResearchOpen Access08 Mar 2022
Scientific Reports

Volume: 12, P: 1-15
GAWMerge expands GWAS sample size and diversity by combining array-based genotyping and whole-genome sequencing

GAWMerge is a computational tool that allows users to integrate SNP genotyping data from array techniques or whole-genome sequencing, providing a feasible method to leverage existing cohorts to increase sample size in genetic studies.

Ravi Mathur
Fang Fang
Eric O. Johnson
ResearchOpen Access11 Aug 2022
Communications Biology

Volume: 5, P: 1-9
Apatorsen plus docetaxel versus docetaxel alone in platinum-resistant metastatic urothelial carcinoma (Borealis-2)

Jonathan E. Rosenberg
Noah M. Hahn
Toni K. Choueiri
ResearchOpen Access16 May 2018
British Journal of Cancer

Volume: 118, P: 1434-1441
Drosophila olfactory memory: single genes to complex neural circuits

Keene and Waddell explore evidence from cutting-edge genetic, imaging and physiological studies and review how the genetic model system of the fly has enabled us to identify the neurons involved and the circuitry of olfactory memory formation and consolidation.

Alex C. Keene
Scott Waddell
Reviews01 May 2007
Nature Reviews Neuroscience

Volume: 8, P: 341-354
Evaluating the role of common risk variation in the recurrence risk of schizophrenia in multiplex schizophrenia families

Mohammad Ahangari
Amanda E. Gentry
Brien P. Riley
ResearchOpen Access21 Jul 2022
Translational Psychiatry

Volume: 12, P: 1-7
Is there a common water-activity limit for the three domains of life?

Andrew Stevenson
Jonathan A Cray
John E Hallsworth
ResearchOpen Access12 Dec 2014
The ISME Journal

Volume: 9, P: 1333-1351
The Fort Collins Commuter Study: Impact of route type and transport mode on personal exposure to multiple air pollutants

Nicholas Good
Anna Mölter
John Volckens
ResearchOpen Access28 Oct 2015
Journal of Exposure Science & Environmental Epidemiology

Volume: 26, P: 397-404
Temporal dynamics of uncultured viruses: a new dimension in viral diversity

Ksenia Arkhipova
Timofey Skvortsov
Leonid A Kulakov
Research13 Oct 2017
The ISME Journal

Volume: 12, P: 199-211
A resource of lipidomics and metabolomics data from individuals with undiagnosed diseases

Jennifer E. Kyle
Kelly G. Stratton
Thomas O. Metz
ResearchOpen Access21 Apr 2021
Scientific Data

Volume: 8, P: 1-12
Overexpression, genomic amplification and therapeutic potential of inhibiting the UbcH10 ubiquitin conjugase in human carcinomas of diverse anatomic origin

Klaus W Wagner
Lisa M Sapinoso
Garret M Hampton
Research21 Jun 2004
Oncogene

Volume: 23, P: 6621-6629
A dataset of acoustic measurements from soundscapes collected worldwide during the COVID-19 pandemic

Samuel Challéat
Nicolas Farrugia
Vera Zina
ResearchOpen Access27 Aug 2024
Scientific Data

Volume: 11, P: 1-16
Allogeneic transplantation in Cutaneous T-cell Lymphoma: improved outcomes associated with early transplantation and acute graft versus host disease

Daniel Angelov
James Dillon
Elisabeth Vandenberghe
Correspondence20 May 2022
Bone Marrow Transplantation

Volume: 57, P: 1332-1334
B-cell maturation antigen expression across hematologic cancers: a systematic literature review

Ahmet Dogan
David Siegel
Ola Landgren
ReviewsOpen Access30 Jun 2020
Blood Cancer Journal

Volume: 10, P: 1-13
Neptune: an environment for the delivery of genomic medicine

Venner Eric
Victoria Yi
Hana Zouk
Research13 Jul 2021
Genetics in Medicine

Volume: 23, P: 1838-1846
Author Correction: Predicting Alzheimer’s disease progression using multi-modal deep learning approach

Garam Lee
Kwangsik Nho
Kristin Fargher
Amendments and CorrectionsOpen Access01 Aug 2023
Scientific Reports

Volume: 13, P: 1
Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Joana Carlevaro-Fita
Andrés Lanzós
Christian von Mering
Amendments and CorrectionsOpen Access08 Dec 2022
Communications Biology

Volume: 5, P: 1
Author Correction: Multimodal hippocampal subfield grading for Alzheimer’s disease classification

Kilian Hett
Vinh-Thong Ta
Kristin Fargher
Amendments and CorrectionsOpen Access30 Jun 2020
Scientific Reports

Volume: 10, P: 1
The tale of TILs in breast cancer: A report from The International Immuno-Oncology Biomarker Working Group

Khalid El Bairi
Harry R. Haynes
Paul J. Van Diest
ReviewsOpen Access01 Dec 2021
npj Breast Cancer

Volume: 7, P: 1-17
Application of a risk-management framework for integration of stromal tumor-infiltrating lymphocytes in clinical trials

Jan Hudeček
Leonie Voorwerk
Zsuzsanna Bago-Horvath
ReviewsOpen Access12 May 2020
npj Breast Cancer

Volume: 6, P: 1-8
Report on computational assessment of Tumor Infiltrating Lymphocytes from the International Immuno-Oncology Biomarker Working Group

Mohamed Amgad
Elisabeth Specht Stovgaard
Zaheed Husain
ReviewsOpen Access12 May 2020
npj Breast Cancer

Volume: 6, P: 1-13
RNAi and HTS: exploring cancer by systematic loss-of-function

Aarron T Willingham
Quinn L Deveraux
Pedro Aza-Blanc
Reviews01 Nov 2004
Oncogene

Volume: 23, P: 8392-8400

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