Nature Search

Caloric restriction disrupts the microbiota and colonization resistance

Severe caloric restriction in humans leads to reversible changes in the gut microbiota that promote weight loss and the expansion of an enteric pathogen in mice.

Reiner Jumpertz von Schwartzenberg
Jordan E. Bisanz
Peter J. Turnbaugh
Research23 Jun 2021
Nature

Volume: 595, P: 272-277
Bile salt hydrolase catalyses formation of amine-conjugated bile acids

We find that bile salt hydrolase N-acyltransferase activity can form bacterial bile acid amidates that are positively correlated with the colonization of gut bacteria that assist in the regulation of the bile acid metabolic network.

Bipin Rimal
Stephanie L. Collins
Andrew D. Patterson
ResearchOpen Access07 Feb 2024
Nature

Volume: 626, P: 859-863
Roles of the gut microbiome in weight management

In this Review, Carmody and Bisanz examine the role of the gut microbiome in energy metabolism, the two-way relationship between the gut microbiome and weight management strategies and opportunities and challenges in the development of microbiome-directed therapies targeting energy balance.

Rachel N. Carmody
Jordan E. Bisanz
Reviews03 May 2023
Nature Reviews Microbiology

Volume: 21, P: 535-550
Human gut bacteria produce Τ_Η17-modulating bile acid metabolites

Bacterially produced bile acids inhibit T_H17 cell function, which may be relevant to the pathophysiology of inflammatory disorders such as inflammatory bowel disease.

Donggi Paik
Lina Yao
A. Sloan Devlin
Research16 Mar 2022
Nature

Volume: 603, P: 907-912
STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies

This Consensus Statement presents the standards for technical reporting in environmental and host-associated microbiome studies (STREAMS) guidelines.

Julia M. Kelliher
Chloe Mirzayi
Emiley A. Eloe-Fadrosh
Reviews01 Dec 2025
Nature Microbiology

Volume: 10, P: 3059-3068
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Evan Bolyen
Jai Ram Rideout
J. Gregory Caporaso
Amendments and Corrections09 Aug 2019
Nature Biotechnology

Volume: 37, P: 1091
Reporting guidelines for human microbiome research: the STORMS checklist

The STORMS tool provides guidance for concise and complete reporting of microbiome studies to facilitate manuscript preparation, peer review, reader comprehension of publications, and comparative analysis of published results.

Chloe Mirzayi
Audrey Renson
Levi Waldron
Reviews17 Nov 2021
Nature Medicine

Volume: 27, P: 1885-1892
Genetic basis for the cooperative bioactivation of plant lignans by Eggerthella lenta and other human gut bacteria

A consortium of four human gut microbiota species, including Eggerthella lenta, can convert plant-derived lignans into bioactive enterolignans via a five-step pathway, providing mechanistic insight into the production of these protective metabolites.

Elizabeth N. Bess
Jordan E. Bisanz
Peter J. Turnbaugh
Research04 Nov 2019
Nature Microbiology

Volume: 5, P: 56-66
Cooking shapes the structure and function of the gut microbiome

Cooked and raw plant diets cause different changes in gut microbiome composition and function, including mechanisms of starch digestibility and xenobiotic availability, and consequently impact host energy status.

Rachel N. Carmody
Jordan E. Bisanz
Peter J. Turnbaugh
Research30 Sept 2019
Nature Microbiology

Volume: 4, P: 2052-2063
Bile acids and the gut microbiota: metabolic interactions and impacts on disease

The gut microbiota metabolizes bile acids, thereby influencing human health and diseases including obesity, colitis and cancer. In this Review, Patterson and colleagues discuss host–microbiota interactions and their influence on the bile acid pool as well as therapeutic implications.

Stephanie L. Collins
Jonathan G. Stine
Andrew D. Patterson
Reviews17 Oct 2022
Nature Reviews Microbiology

Volume: 21, P: 236-247
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Evan Bolyen
Jai Ram Rideout
J. Gregory Caporaso
Correspondence24 Jul 2019
Nature Biotechnology

Volume: 37, P: 852-857
A multi-platform metabolomics approach identifies highly specific biomarkers of bacterial diversity in the vagina of pregnant and non-pregnant women

Amy McMillan
Stephen Rulisa
Gregor Reid
ResearchOpen Access21 Sept 2015
Scientific Reports

Volume: 5, P: 1-14

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Caloric restriction disrupts the microbiota and colonization resistance

Bile salt hydrolase catalyses formation of amine-conjugated bile acids

Roles of the gut microbiome in weight management

Human gut bacteria produce Τ_Η17-modulating bile acid metabolites

STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Reporting guidelines for human microbiome research: the STORMS checklist

Genetic basis for the cooperative bioactivation of plant lignans by Eggerthella lenta and other human gut bacteria

Cooking shapes the structure and function of the gut microbiome

Bile acids and the gut microbiota: metabolic interactions and impacts on disease

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

A multi-platform metabolomics approach identifies highly specific biomarkers of bacterial diversity in the vagina of pregnant and non-pregnant women

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