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Showing 1–3 of 3 results

Advanced filters: Author: Kristopher W. Brannan Clear advanced filters

A visual–omics foundation model to bridge histopathology with spatial transcriptomics

OmiCLIP is a visual–omics foundation model that integrates histology and spatial transcriptomics. The associated Loki platform offers accurate and robust tools for alignment, annotation, cell-type decomposition and spatial gene expression prediction.

Weiqing Chen
Pengzhi Zhang
Guangyu Wang
ResearchOpen Access29 May 2025
Nature Methods

Volume: 22, P: 1568-1582
A relay velocity model infers cell-dependent RNA velocity

cellDancer enables RNA velocity estimation with cell-specific kinetics.

Shengyu Li
Pengzhi Zhang
Guangyu Wang
ResearchOpen Access03 Apr 2023
Nature Biotechnology

Volume: 42, P: 99-108
Robust single-cell discovery of RNA targets of RNA-binding proteins and ribosomes

Surveying targets by APOBEC-mediated profiling identifies binding sites of RBPs by C-to-U RNA editing. STAMP is isoform specific, can be multiplexed and enables detection of ribosome association in single cells.

Kristopher W. Brannan
Isaac A. Chaim
Gene W. Yeo
Research07 May 2021
Nature Methods

Volume: 18, P: 507-519