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Correction: Corrigendum: Measuring mRNA copy number in individual Escherichia coli cells using single-molecule fluorescent in situ hybridization

Samuel O Skinner
Leonardo A Sepúlveda
Ido Golding
Amendments and Corrections27 Aug 2015
Nature Protocols

Volume: 10, P: 1457
Combining protein and mRNA quantification to decipher transcriptional regulation

The combination of immunofluorescence and single-molecule FISH (smFISH) enables a quantitative description of how transcription factor binding drives the kinetics of mRNA production.

Heng Xu
Leonardo A Sepúlveda
Ido Golding
Research22 Jun 2015
Nature Methods

Volume: 12, P: 739-742
The Helicobacter pylori Genome Project: insights into H. pylori population structure from analysis of a worldwide collection of complete genomes

The bacterium Helicobacter pylori, often found in the human stomach, can be classified into distinct subpopulations associated with the geographic origin of the host. Here, the authors provide insights into H. pylori population structure by collecting over 1,000 clinical strains from 50 countries and generating and analyzing high-quality bacterial genome sequences.

Kaisa Thorell
Zilia Y. Muñoz-Ramírez
Charles S. Rabkin
ResearchOpen Access11 Dec 2023
Nature Communications

Volume: 14, P: 1-16
Cyclic tetrapeptides from the marine strain Streptomyces sp. PNM-161a with activity against rice and yam phytopathogens

Luz A. Betancur
Abel M. Forero
Freddy A. Ramos
Research26 Jun 2019
The Journal of Antibiotics

Volume: 72, P: 744-751
Photoprotective activity from Colombian Caribbean brown algae using HPLC-DAD metabolic profiling by MCR-ALS data analysis

Sara P. Abril
Natalia Rincón-Díaz
Freddy A. Ramos
ResearchOpen Access09 May 2025
Scientific Reports

Volume: 15, P: 1-15
Macrophage-dependent IL-1β production induces cardiac arrhythmias in diabetic mice

Ventricular arrhythmia is a leading cause of death in patients with diabetes. Here the authors show that inflammasome activation and ILK-1β production in cardiac macrophages cause arrhythmia in diabetic mice, which can be successfully treated using agonists to IL-1β receptor or NLRP3 inhibitors.

Gustavo Monnerat
Micaela L. Alarcón
Emiliano Medei
ResearchOpen Access24 Nov 2016
Nature Communications

Volume: 7, P: 1-15
The transcription fidelity factor GreA impedes DNA break repair

In Escherichia coli, the control of RNA polymerase backtracking by transcription elongation factors impairs DNA break repair by affecting RecBCD resection and consequently RecA loading at sites far removed from the original DNA break.

Priya Sivaramakrishnan
Leonardo A. Sepúlveda
Christophe Herman
Research04 Oct 2017
Nature

Volume: 550, P: 214-218
General properties of transcriptional time series in Escherichia coli

Ido Golding and colleagues examine transcriptional time series in Escherichia coli, characterizing mRNA copy number statistics for 20 promoters at single transcript resolution. They find that the degree of burstiness depends primarily on the level of gene expression.

Lok-hang So
Anandamohan Ghosh
Ido Golding
Research01 May 2011
Nature Genetics

Volume: 43, P: 554-560
Author Correction: Macrophage-dependent IL-1β production induces cardiac arrhythmias in diabetic mice

Gustavo Monnerat
Micaela L. Alarcón
Emiliano Medei
Amendments and CorrectionsOpen Access08 Dec 2021
Nature Communications

Volume: 12, P: 1-2
Single-cell genomic variation induced by mutational processes in cancer

Single-cell whole-genome sequencing shows that 'foreground' cell-to-cell structural variation and alterations in copy number are associated with genomic diversity and evolution in triple-negative breast and high-grade serous ovarian cancers.

Tyler Funnell
Ciara H. O’Flanagan
Samuel Aparicio
ResearchOpen Access26 Oct 2022
Nature

Volume: 612, P: 106-115
Clonal fitness inferred from time-series modelling of single-cell cancer genomes

Whole-genome sequencing of human cancer cells in patient-derived mouse xenograft models indicates a key role for TP53 in determining the fitness landscape of polyclonal cancer cell populations.

Sohrab Salehi
Farhia Kabeer
Sohrab P. Shah
Research23 Jun 2021
Nature

Volume: 595, P: 585-590
Measuring mRNA copy number in individual Escherichia coli cells using single-molecule fluorescent in situ hybridization

Samuel O Skinner
Leonardo A Sepúlveda
Ido Golding
Protocols16 May 2013
Nature Protocols

Volume: 8, P: 1100-1113
The utility of the Edmonton Obesity Staging System for the prediction of COVID-19 outcomes: a multi-centre study

Marcela Rodríguez-Flores
Eduardo W. Goicochea-Turcott
Edward W. Gregg
ResearchOpen Access01 Jan 2022
International Journal of Obesity

Volume: 46, P: 661-668

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Correction: Corrigendum: Measuring mRNA copy number in individual Escherichia coli cells using single-molecule fluorescent in situ hybridization

Combining protein and mRNA quantification to decipher transcriptional regulation

The Helicobacter pylori Genome Project: insights into H. pylori population structure from analysis of a worldwide collection of complete genomes

Cyclic tetrapeptides from the marine strain Streptomyces sp. PNM-161a with activity against rice and yam phytopathogens

Photoprotective activity from Colombian Caribbean brown algae using HPLC-DAD metabolic profiling by MCR-ALS data analysis

Macrophage-dependent IL-1β production induces cardiac arrhythmias in diabetic mice

The transcription fidelity factor GreA impedes DNA break repair

General properties of transcriptional time series in Escherichia coli

Author Correction: Macrophage-dependent IL-1β production induces cardiac arrhythmias in diabetic mice

Single-cell genomic variation induced by mutational processes in cancer

Clonal fitness inferred from time-series modelling of single-cell cancer genomes

Measuring mRNA copy number in individual Escherichia coli cells using single-molecule fluorescent in situ hybridization

The utility of the Edmonton Obesity Staging System for the prediction of COVID-19 outcomes: a multi-centre study

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