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Showing 151–164 of 164 results
Advanced filters: Author: Mark B Gerstein Clear advanced filters
  • Computing plays a critical role in the biological sciences but faces increasing challenges of scale and complexity. Quantum computing, a computational paradigm exploiting the unique properties of quantum mechanical analogs of classical bits, seeks to address many of these challenges. We discuss the potential for quantum computing to aid in the merging of insights across different areas of biological sciences.

    • Prashant S. Emani
    • Jonathan Warrell
    • Aram W. Harrow
    Comments & Opinion
    Nature Methods
    Volume: 18, P: 701-709
  • The RGASP consortium compared 25 RNA-seq analysis programs in their ability to identify exons, reconstruct transcripts and quantify expression levels. Assembly of isoforms and their expression levels in higher eukaryotes remains a challenge.

    • Tamara Steijger
    • Josep F Abril
    • Paul Bertone
    ResearchOpen Access
    Nature Methods
    Volume: 10, P: 1177-1184
  • A full understanding of the biology and function of the numerous cell types that comprise the nervous system requires analysis of their transcriptional and translational profiles. In this Review article, the authors discuss the methods for overcoming the challenges that accompany the collection of large proteomic datasets and their integration with other data modalities.

    • Robert R Kitchen
    • Joel S Rozowsky
    • Angus C Nairn
    Reviews
    Nature Neuroscience
    Volume: 17, P: 1491-1499
  • Marie Loh, Weihua Zhang et al. use a genome-wide association study meta-analysis to examine variants associated with Type 2 diabetes (T2D) in South Asian and European ancestry cohorts. Their results provide further insights into the genetic mechanisms underlying T2D across ancestral populations.

    • Marie Loh
    • Weihua Zhang
    • John C. Chambers
    ResearchOpen Access
    Communications Biology
    Volume: 5, P: 1-10
  • Transcription factors (TFs) are essential for gene expression, but very little is known about the majority of human TFs. This Analysis article provides a manually curated repertoire of sequence-specific human TFs as a foundation for future research, and examines patterns of TF expression and conservation.

    • Juan M. Vaquerizas
    • Sarah K. Kummerfeld
    • Nicholas M. Luscombe
    Research
    Nature Reviews Genetics
    Volume: 10, P: 252-263
  • Recent research on disparate psychiatric disorders has implicated rare variants in genes involved in global gene regulation and chromatin modification, as well as many common variants located primarily in regulatory regions of the genome. Understanding precisely how these variants contribute to disease will require a deeper appreciation for the mechanisms of gene regulation in the developing and adult human brain. The PsychENCODE project aims to produce a public resource of multidimensional genomic data using tissue- and cell type–specific samples from approximately 1,000 phenotypically well-characterized, high-quality healthy and disease-affected human post-mortem brains, as well as functionally characterize disease-associated regulatory elements and variants in model systems. We are beginning with a focus on autism spectrum disorder, bipolar disorder and schizophrenia, and expect that this knowledge will apply to a wide variety of psychiatric disorders. This paper outlines the motivation and design of PsychENCODE.

    • Schahram Akbarian
    • Chunyu Liu
    • Nenad Sestan
    Comments & Opinion
    Nature Neuroscience
    Volume: 18, P: 1707-1712
  • Protein–RNA interactions are central to the regulation of gene expression. Emerging technologies for pinpointing these interactions, both in large complexes and between individual proteins and RNA, are discussed. Methods for analysing these data are also considered.

    • Julian König
    • Kathi Zarnack
    • Jernej Ule
    Reviews
    Nature Reviews Genetics
    Volume: 13, P: 77-83