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Showing 51–100 of 8194 results
Advanced filters: Author: Matthew A Lines Clear advanced filters
  • Multi-trait genome-wide analyses identify variants associated with comorbid lung diseases. Polygenic scores leveraging shared components of heritable risk improve prediction of asthma, chronic obstructive pulmonary disease and lung cancer in a multi-ancestry cohort.

    • Yixuan He
    • Wenhan Lu
    • Alicia R. Martin
    Research
    Nature Genetics
    Volume: 58, P: 289-298
  • How white matter develops along the length of major tracts in humans remains unknown. Here, the authors identify fundamental patterns of human white matter development along distinct axes that reflect brain organization.

    • Audrey C. Luo
    • Steven L. Meisler
    • Theodore D. Satterthwaite
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-19
  • Rare cells are often biologically and clinically important, but their low abundance makes them challenging to study using single-cell transcriptomics. Here, the authors develop PURE-seq which integrates FACS and PIP-seq to directly sequence ultra-rare cells. It captures cells at 1 in 1,000,000 rarity, which the authors demonstrate by profiling circulating tumor cells and identifying Egr1 as a regulator of mouse hematopoietic stem cell aging.

    • Sixuan Pan
    • Inés Fernández-Maestre
    • Adam R. Abate
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-15
  • Here, a combination of forward genetics and genome-wide association analyses has been used to show that variation at a single genetic locus in Arabidopsis thaliana underlies phenotypic variation in vegetative growth as well as resistance to infection. The strong enhancement of resistance mediated by one of the alleles at this locus explains the allele's persistence in natural populations throughout the world, even though it drastically reduces the production of new leaves.

    • Marco Todesco
    • Sureshkumar Balasubramanian
    • Detlef Weigel
    Research
    Nature
    Volume: 465, P: 632-636
  • The impact of variants of uncertain significance (VUS) on protein function and cancer risk remain unclear. Here, the authors focus on the functional impact of VUS of the PALB2 gene and identify defects in DNA damage repair by homologous recombination associated with increased risk of breast cancer.

    • Rick A.C.M. Boonen
    • Sabine C. Knaup
    • Haico van Attikum
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-17
  • Understanding the mechanisms underlying the survival of drug tolerant persister cells following chemotherapy remains elusive. Here, multi-omics analysis and experimental approaches show that the germ-cell-specific H3K4 methyltransferase PRDM9 promotes metabolic rewiring in glioblastoma stem cells.

    • George L. Joun
    • Emma G. Kempe
    • Lenka Munoz
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-30
  • When doubly-degenerate band crossings known as Kramers nodal lines intersect the Fermi level, they form exotic three-dimensional Fermi surfaces composed of massless Dirac fermions. Here, the authors present evidence that the 3R polytypes of TaS2 and NbS2 are Kramers nodal line metals with open octdong and spindle-torus Fermi surfaces, respectively.

    • Gabriele Domaine
    • Moritz M. Hirschmann
    • Niels B. M. Schröter
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-9
  • MedHELM, an extensible evaluation framework including a new taxonomy for classifying medical tasks and a benchmark of many datasets across these categories, enables the evaluation of large language models on real-world clinical tasks.

    • Suhana Bedi
    • Hejie Cui
    • Nigam H. Shah
    Research
    Nature Medicine
    P: 1-9
  • Glioblastoma is characterised by high levels of intratumoural heterogeneity and plasticity, hindering treatment. Here, the authors develop an analytical framework, scFOCAL, to predict the sensitivity of glioblastoma cell subpopulations to therapies based on reversal of disease transcriptional signatures to identify synergistic therapeutic combinations.

    • Robert K. Suter
    • Anna M. Jermakowicz
    • Nagi G. Ayad
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-18
  • The study used snMultiome-seq to map gene expression and chromatin accessibility in human central amygdala cells from people with and without AUD. Here, the authors show that inhibitory neurons are most affected, with KLF16-driven regulatory changes and AUD-risk variants disrupting gene activity.

    • Che Yu Lee
    • Ahyeon Hwang
    • Matthew J. Girgenti
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-17
  • The endoplasmic-reticulum (ER) transmembrane protein IRE1 mitigates ER stress through kinase-ribonuclease and scaffolding activities. However, a significant nonenzymatic IRE1 dependency has been shown in cancer. Here, the authors design a proteolysis-targeting chimera (PROTAC) to fully disrupt cellular IRE1 protein, selectively blocking growth of IRE1-dependent cancer cells.

    • Jin Du
    • Elisia Villemure
    • Avi Ashkenazi
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • Sheep producers face growing expectations to produce more food, conserve biodiversity, stay profitable and cut emissions. The authors find that interventions work best when addressing underperforming environmental, economic, or psychological areas.

    • Ganesh Bhattarai
    • Karen M. Christie-Whitehead
    • Matthew Tom Harrison
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-18
  • Cancers evolve as they progress under differing selective pressures. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, the authors present the method TrackSig the estimates evolutionary trajectories of somatic mutational processes from single bulk tumour data.

    • Yulia Rubanova
    • Ruian Shi
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • The anterior cingulate cortex encodes affective pain behaviours modulated by opioids; targeting opioid-sensitive neurons through a new chemogenetic gene therapy replicates the analgesic effects of morphine, providing precise chronic pain relief without affecting sensory detection.

    • Corinna S. Oswell
    • Sophie A. Rogers
    • Gregory Corder
    ResearchOpen Access
    Nature
    Volume: 649, P: 938-947
  • In social settings, people need to establish how much they contribute to shared outcomes. Here, the authors show that people strategically alter their actions to establish their level of control and identify neural activity underlying this process.

    • Lisa Spiering
    • Hailey A. Trier
    • Jacqueline Scholl
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-21
  • The type VI secretion system (T6SS) and Eag chaperones deliver toxic membrane protein effectors into rival cells. However, it is unknown how Eags and their effectors dissociate. Here, the authors show Eag chaperones bind effectors tightly and may release them via a subtle conformational change.

    • Matthew Van Schepdael
    • Iman Asakereh
    • Gerd Prehna
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-18
  • Covalent KRAS inhibitors show initial responses but resistance limits durability. Here drug-induced hapten peptides are identified and characterized, enabling production of high affinity, cross-HLA T cell engagers that stabilize low density hapten peptide MHCs to drive tumor-specific killing.

    • Lorenzo Maso
    • Sarah A. Mosure
    • Lauren E. Stopfer
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • Mu opioid receptor agonists with a preference for the non-GTP-bound state of the G protein promote GTP release, thereby potentiating antinociceptive effects of drugs such as morphine and fentanyl without also increasing their respiratory or cardiac effects.

    • Edward L. Stahl
    • Matthew A. Swanson
    • Laura M. Bohn
    ResearchOpen Access
    Nature
    Volume: 650, P: 500-508
  • The authors present SVclone, a computational method for inferring the cancer cell fraction of structural variants from whole-genome sequencing data.

    • Marek Cmero
    • Ke Yuan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • Lung adenocarcinomas bearing the ID2 mutational signature display increased LINE-1 retrotransposon activity, which contributes to their fast evolutionary dynamics and aggressive phenotype.

    • Tongwu Zhang
    • Wei Zhao
    • Maria Teresa Landi
    Research
    Nature
    Volume: 650, P: 230-241
  • Clear cell renal cell carcinoma (ccRCC) bears the hallmark loss of VHL but remains incurable. Here, the authors identify the SLC1A1 dicarboxylic amino acid transporter as an actionable, oncogenic, HIF-independent, metabolic dependency in VHL-deficient ccRCCs.

    • Treg Grubb
    • Pooneh Koochaki
    • Abhishek A. Chakraborty
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • Analysis of a placebo-controlled trial of a BCMA-targeting CAR-T cell therapy in patients with myasthenia gravis shows that CAR-T cell infusion selectively remodels the systemic immune environment, with elimination of BCMA-high plasma cells and activated plasmacytoid dendritic cells and changes in the autoreactive B cell repertoire.

    • Renee R. Fedak
    • Rachel N. Ruggerie
    • Kelly Gwathmey
    ResearchOpen Access
    Nature Medicine
    P: 1-13
  • Mismatch repair pathway is frequently dysregulated across cancer types, commonly represented by loss of MLH1 or MSH2 gene expression. Here the authors model MLH1 missense mutations from patients to study how cytoplasmic localization of MLH1, promotes resistance to endocrine therapy but predicts response to cell cycle inhibitors in breast cancer.

    • Aloran Mazumder
    • Jerry Dewitt
    • Svasti Haricharan
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-19
  • Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

    • Shimin Shuai
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Allogeneic T cell therapies could be used in therapeutic applications because of their potential for ‘off-the-shelf’ access and standardised production. Here the authors have developed a multidimensional workflow profiling platform for EBV-specific T cell therapy and show that correlative biomarkers of T cell potency and effector function are associated with therapeutic effectiveness in xenogeneic mouse EBV-LCL models.

    • Corey Smith
    • Vijayendra Dasari
    • Rajiv Khanna
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-14
  • The spectrally narrow photoluminescence lines occurring in transition metal dichalcogenides (TMD) heterostructures at low temperature have been attributed to interlayer excitons (IXs) localized by the moiré potential between the TMD layers. Here, the authors show that these lines are present even when the moiré potential is suppressed by inserting an hBN spacer between the TMD layers.

    • Fateme Mahdikhanysarvejahany
    • Daniel N. Shanks
    • John R. Schaibley
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-6
  • Active galactic nuclei are surrounded by a dusty and molecular disk that fuels supermassive black holes and connects them to their host galaxies. Here, the authors show with JWST interferometric observations that most of the dust in the Circinus galaxies lies in a compact disk, while only a tiny fraction traces hot outflowing material.

    • Enrique Lopez-Rodriguez
    • Joel Sanchez-Bermudez
    • Matthew J. Hankins
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-11
  • In somatic cells the mechanisms maintaining the chromosome ends are normally inactivated; however, cancer cells can re-activate these pathways to support continuous growth. Here, the authors characterize the telomeric landscapes across tumour types and identify genomic alterations associated with different telomere maintenance mechanisms.

    • Lina Sieverling
    • Chen Hong
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • Deaminases of the APOBEC3 family contribute to the mutagenesis of various cancers, including urothelial carcinoma (UC) of the bladder. Here, the authors use functional studies and transcriptomics to demonstrate that APOBEC3 promotes tumour progression and squamous trans-differentiation in UC through IL-1α and downstream activation of the AP-1 transcription factor.

    • Michael S. Sturdivant
    • Andrew S. Truong
    • William Y. Kim
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-18
  • The authors find that TDP-43 loss of function—the pathology defining the neurodegenerative conditions ALS and FTD—induces novel mRNA polyadenylation events, which have different effects, including an increase in RNA stability, leading to higher protein levels.

    • Sam Bryce-Smith
    • Anna-Leigh Brown
    • Pietro Fratta
    ResearchOpen Access
    Nature Neuroscience
    Volume: 28, P: 2190-2200
  • Determinants of WEE1 inhibitor sensitivity in cancer cells are largely undefined. Here, the authors show that WEE1 inhibitors beyond their cell cycle perturbing effects also lead to paradoxical activation of the integrated stress response kinase GCN2.

    • Rinskje B. Tjeerdsma
    • Timothy F. Ng
    • Marcel A.T.M. van Vugt
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-20
  • The relation between magnetooptical activity and chirality has previously been confused. Chiral polymer films are presented with state-of-the-art Verdet constants, revealing the role of chirality, and a strategy to enhance the magnetooptical B term.

    • Leo Delage-Laurin
    • David Reger
    • Matthew J. Fuchter
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-7
  • Femtosecond photoexcitation drives a coherent twist–untwist motion of the moiré superlattice in 2° and 57° twisted WSe2/MoSe2 heterobilayers.

    • Cameron J. R. Duncan
    • Amalya C. Johnson
    • Fang Liu
    Research
    Nature
    Volume: 647, P: 619-624