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Showing 1–16 of 16 results
Advanced filters: Author: Michael Spannagl Clear advanced filters
  • Available wheat genomes are annotated by projecting Chinese Spring gene models across the new assemblies. Here, the authors generate de novo gene annotations for the 9 wheat genomes, identify core and dispensable transcriptome, and reveal conservation and divergence of gene expression balance across homoeologous subgenomes.

    • Benjamen White
    • Thomas Lux
    • Anthony Hall
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • A pangenome of the Cannabis genus including 193 genomes demonstrates high variability in most of the genome but low diversity in cannabinoid synthesis genes and provides a resource for future genetic studies and crop optimization.

    • Ryan C. Lynch
    • Lillian K. Padgitt-Cobb
    • Todd P. Michael
    ResearchOpen Access
    Nature
    Volume: 643, P: 1001-1010
  • A pangenome analysis of 76 wild and domesticated barley accessions in combination with short-read sequence data of 1,315 barley genotypes indicates that allelic diversity at structurally complex loci may have helped crop plants to adapt to agricultural ecosystems.

    • Murukarthick Jayakodi
    • Qiongxian Lu
    • Nils Stein
    ResearchOpen Access
    Nature
    Volume: 636, P: 654-662
  • The genome of the wild grass Brachypodium distachyon (Brachypodium), a member of the Pooideae subfamily, is sequenced. The Pooideae are one of three subfamilies of grasses that provide the bulk of human nutrition and may become major sources of renewable energy. Availability of the genome sequence should help establish Brachypodium as a model for developing new energy and food crops.

    • John P. Vogel
    • David F. Garvin
    • Ivan Baxter
    Research
    Nature
    Volume: 463, P: 763-768
  • Comparison of multiple genome assemblies from wheat reveals extensive diversity that results from the complex breeding history of wheat and provides a basis for further potential improvements to this important food crop.

    • Sean Walkowiak
    • Liangliang Gao
    • Curtis J. Pozniak
    ResearchOpen Access
    Nature
    Volume: 588, P: 277-283
  • Sequencing of the hexaploid bread wheat genome shows that it is highly dynamic, with significant loss of gene family members on polyploidization and domestication, and an abundance of gene fragments.

    • Rachel Brenchley
    • Manuel Spannagl
    • Neil Hall
    ResearchOpen Access
    Nature
    Volume: 491, P: 705-710
  • Neutrophils release the serine proteases neutrophil elastase and cathepsin G, which have microbicidal activity and thereby contribute to the innate immune response. Steffen Massberg et al. now show that these neutrophil serine proteases, in association with extracellular nucleosomes, can also promote coagulation and thrombosis within large blood vessels. In a mouse model of systemic bacterial infection, these proteases spurred intravascular coagulation in the microcirculation of the liver, limiting bacterial tissue invasion. These findings point to a role for thrombosis in antimicrobial defense.

    • Steffen Massberg
    • Lenka Grahl
    • Bernd Engelmann
    Research
    Nature Medicine
    Volume: 16, P: 887-896
  • Sorghum is an African grass that is grown for food, animal feed and fuel. The current paper presents an initial analysis of the ∼730 megabase genome of Sorghum bicolor. Genome analysis and its comparison with maize and rice shed light on grass genome evolution and also provide insights into the evolution of C4 photosynthesis, as well as protein coding genes and miRNAs that might contribute to sorghum's drought tolerance.

    • Andrew H. Paterson
    • John E. Bowers
    • Daniel S. Rokhsar
    ResearchOpen Access
    Nature
    Volume: 457, P: 551-556
  • Exome sequencing of a worldwide panel of 487 wheat genotypes, including landraces, cultivars and modern varieties, sheds light on wheat genomic diversity and the evolution of modern bread wheat.

    • Caroline Pont
    • Thibault Leroy
    • Jérôme Salse
    Research
    Nature Genetics
    Volume: 51, P: 905-911
  • This Review explores the challenges and strategies for developing gapless telomere-to-telomere genome assemblies to enhance our understanding of genome organization and improve crops through genome-assisted breeding or gene editing.

    • Vanika Garg
    • Abhishek Bohra
    • Rajeev K. Varshney
    Reviews
    Nature Genetics
    Volume: 56, P: 1788-1799
  • A combination of advanced sequencing and mapping techniques is used to produce a reference genome of Aegilops tauschii, progenitor of the wheat D genome, providing a valuable resource for comparative genetic studies.

    • Ming-Cheng Luo
    • Yong Q. Gu
    • Jan Dvořák
    ResearchOpen Access
    Nature
    Volume: 551, P: 498-502
  • This paper reports the genome sequence of domesticated tomato, a major crop plant, and a draft sequence for its closest wild relative; comparative genomics reveal very little divergence between the two genomes but some important differences with the potato genome, another important food crop in the genus Solanum.

    • Shusei Sato
    • Satoshi Tabata
    • René M. Klein Lankhorst
    ResearchOpen Access
    Nature
    Volume: 485, P: 635-641