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Near-infrared fluorescent proteins

Random and targeted mutagenesis of the far-red fluorescent protein Katushka followed by screening for low toxicity and red-shifted emission resulted in two near-infrared fluorescent proteins, eqFP650 and eqFP670, that display desirable properties for in vivo imaging compared to existing near-infrared fluorescent proteins.

Dmitry Shcherbo
Irina I Shemiakina
Dmitriy M Chudakov
Research05 Sept 2010
Nature Methods

Volume: 7, P: 827-829
Towards error-free profiling of immune repertoires

A two-step error correction process for high throughput–sequenced T- and B-cell receptors allows the elimination of most errors while not diminishing the natural complexity of the repertoires.

Mikhail Shugay
Olga V Britanova
Dmitriy M Chudakov
Research04 May 2014
Nature Methods

Volume: 11, P: 653-655
A genetically encoded photosensitizer

Maria E Bulina
Dmitriy M Chudakov
Konstantin A Lukyanov
Research20 Dec 2005
Nature Biotechnology

Volume: 24, P: 95-99
Targeted depletion of TRBV9⁺ T cells as immunotherapy in a patient with ankylosing spondylitis

Targeted depletion of TRBV9⁺ T cells induces remission in a single patient with ankylosing spondylitis, with significant improvements in functional and mobility metrics.

Olga V. Britanova
Kseniia R. Lupyr
Dmitry M. Chudakov
ResearchOpen Access23 Oct 2023
Nature Medicine

Volume: 29, P: 2731-2736
Memory CD4⁺ T cells are generated in the human fetal intestine

Koning and colleagues used mass cytometry, single-cell RNA-seq and high-throughput TCR sequencing to characterize the CD4⁺ T cell compartment in the human fetal intestine.

Na Li
Vincent van Unen
Frits Koning
Research21 Jan 2019
Nature Immunology

Volume: 20, P: 301-312
Unc5C and DCC act downstream of Ctip2 and Satb2 and contribute to corpus callosum formation

The neocortex is responsible for higher level cognitive functions and long-range neural connections are critical for mediating these functions. Here, Srivatsa et al.show that axon guidance molecules downstream of transcription factors Stab2 and Ctip2 play a role in the establishment of cortical connections during mouse brain development.

Swathi Srivatsa
Srinivas Parthasarathy
Victor Tarabykin
ResearchOpen Access17 Apr 2014
Nature Communications

Volume: 5, P: 1-15
MiTCR: software for T-cell receptor sequencing data analysis

Dmitriy A Bolotin
Mikhail Shugay
Dmitriy M Chudakov
Correspondence28 Jul 2013
Nature Methods

Volume: 10, P: 813-814
Chromophore-assisted light inactivation (CALI) using the phototoxic fluorescent protein KillerRed

Maria E Bulina
Konstantin A Lukyanov
Dmitriy M Chudakov
Protocols03 Aug 2006
Nature Protocols

Volume: 1, P: 947-953
Contribution of functional KIR3DL1 to ankylosing spondylitis

Ivan V Zvyagin
Ilgar Z Mamedov
Dmitriy M Chudakov
Research06 Sept 2010
Cellular & Molecular Immunology

Volume: 7, P: 471-476
B cells, plasma cells and antibody repertoires in the tumour microenvironment

This Review discusses the various ways in which B cells, plasma cells and antibodies shape the immune response in cancer. B cells can have both protumour and antitumour roles, and the authors discuss the potential of targeting these cells for therapy.

George V. Sharonov
Ekaterina O. Serebrovskaya
Dmitriy M. Chudakov
Reviews27 Jan 2020
Nature Reviews Immunology

Volume: 20, P: 294-307

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Near-infrared fluorescent proteins

Towards error-free profiling of immune repertoires

A genetically encoded photosensitizer

Targeted depletion of TRBV9⁺ T cells as immunotherapy in a patient with ankylosing spondylitis

Memory CD4⁺ T cells are generated in the human fetal intestine

Unc5C and DCC act downstream of Ctip2 and Satb2 and contribute to corpus callosum formation

MiTCR: software for T-cell receptor sequencing data analysis

Chromophore-assisted light inactivation (CALI) using the phototoxic fluorescent protein KillerRed

Contribution of functional KIR3DL1 to ankylosing spondylitis

B cells, plasma cells and antibody repertoires in the tumour microenvironment

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