Nature Search

The Neonatal Microbiome and Necrotizing Enterocolitis.

George Weinstock Ph.D.
Phillip Tarr M.D.
Vincent Magrini Ph.D.
ResearchOpen Access18 Nov 2010
Nature Precedings

P: 1
Effect of Crohn's Disease Risk Alleles on Enteric Microbiota Marker Paper

Norman Pace
Lloyd Mayer
Charles Robertson
ResearchOpen Access12 Oct 2010
Nature Precedings

P: 1
Social and psychological adversity are associated with distinct mother and infant gut microbiome variations

Here, in a cohort of mother-child dyads, the authors show that maternal prenatal social disadvantage and psychosocial stressors associate with distinct gut microbiome taxonomic and functional diversity in both the mothers and their four-month children.

Barbara B. Warner
Bruce A. Rosa
Makedonka Mitreva
ResearchOpen Access20 Sept 2023
Nature Communications

Volume: 14, P: 1-19
Azithromycin decolonization of STEC—a new risk emerges

Michael E. Seifert
Phillip I. Tarr
Correspondence05 Jun 2012
Nature Reviews Nephrology

Volume: 8, P: 429
Colonic goblet cell-associated antigen passages mediate physiologic and beneficial translocation of live gut bacteria in preweaning mice

Colonic goblet cell-associated passages allow translocation of live bacteria to other organs in early life, potentially leading to beneficial impacts.

Sreeram Udayan
Alexandria N. Floyd
Rodney D. Newberry
Research01 Apr 2025
Nature Microbiology

Volume: 10, P: 927-938
Gut microbiome evolution from infancy to 8 years of age

In a unique cohort of twins followed from birth to 8 years of age, shotgun sequencing of stool samples reveals that the transmission, persistence and evolutionary adaptation of bacterial strains are structured by early-life diet and weaning.

Sanjam S. Sawhney
Robert Thänert
Gautam Dantas
Research02 Apr 2025
Nature Medicine

Volume: 31, P: 2004-2015
Credible inferences in microbiome research: ensuring rigour, reproducibility and relevance in the era of AI

Artificial intelligence (AI) is a powerful tool that could be applied to microbiome research. This Perspective discusses best practices and current limitations with the application of AI in microbiome data research, giving insights into future use and practical advice and recommendations on its use.

Alberto Caminero
Carolina Tropini
Elena F. Verdu
Reviews31 Jul 2025
Nature Reviews Gastroenterology & Hepatology

P: 1-16
Azithromycin and decolonization after HUS

An observational study associates azithromycin use with accelerated stool decolonization in patients infected with Shiga toxin-producing Escherichia coli O104:H4. Even if this association is causal, however, the value of late-in-illness treatment is not established and the results provide no support for early-in-illness treatment of Shiga toxin-producing E. coli infections.

Michael E. Seifert
Phillip I. Tarr
News & Views01 May 2012
Nature Reviews Nephrology

Volume: 8, P: 317-318
Longitudinal gut virome analysis identifies specific viral signatures that precede necrotizing enterocolitis onset in preterm infants

Gut virome analysis of preterm infants at risk of developing necrotizing enterocolitis identifies a conserved viral signature that precedes disease onset.

Emily A. Kaelin
Cynthia Rodriguez
Efrem S. Lim
ResearchOpen Access21 Apr 2022
Nature Microbiology

Volume: 7, P: 653-662
Persistent metagenomic signatures of early-life hospitalization and antibiotic treatment in the infant gut microbiota and resistome

Using metagenomics, culture and machine learning approaches, the authors characterized the resistome of preterm infants that received antibiotics and found that they have an enriched gut antibiotic resistome with distinct assembly patterns and prolonged carriage of multidrug-resistant bacteria, compared with healthy infants that did not receive antibiotics.

Andrew J. Gasparrini
Bin Wang
Gautam Dantas
Research09 Sept 2019
Nature Microbiology

Volume: 4, P: 2285-2297
Von Willebrand Factor and Von Willebrand Factor-Cleaving Metalloprotease Activity in Escherichia coli O157:H7-Associated Hemolytic Uremic Syndrome

Han-Mou Tsai
Wayne L Chandler
Phillip I Tarr
Research01 May 2001
Pediatric Research

Volume: 49, P: 653-659
Infant diet and maternal gestational weight gain predict early metabolic maturation of gut microbiomes

Infant nutrition and maternal weight gain during pregnancy impact early-life acquisition and function of the gut microbiome .

Aimee M. Baumann-Dudenhoeffer
Alaric W. D’Souza
Gautam Dantas
Research29 Oct 2018
Nature Medicine

Volume: 24, P: 1822-1829
Development of the gut microbiota and mucosal IgA responses in twins and gnotobiotic mice

The relationship between assembly of the gut community and gut mucosal immunoglobulin A responses during the first 24–36 months of postnatal life in a cohort of 40 twin pairs is defined and modelled in gnotobiotic mice.

Joseph D. Planer
Yangqing Peng
Jeffrey I. Gordon
Research25 May 2016
Nature

Volume: 534, P: 263-266
Early life dynamics of the human gut virome and bacterial microbiome in infants

Colonization of the infant gut by viruses, bacteriophages and bacteria over the first two years of life.

Efrem S Lim
Yanjiao Zhou
Lori R Holtz
Research14 Sept 2015
Nature Medicine

Volume: 21, P: 1228-1234
Reducing stunting among children: the potential contribution of diagnostics

Stunting affects ~ 147 million children in developing countries. Studies have pointed to a relationship between stunting and different pathogens that are associated with diarrhoeal illness. New easy-to-use tools for diagnosing these pathogens could help to identify children at risk for growth shortfall, and reduce the prevalence of stunting and the large burden of disease associated with it.

Karen A. Ricci
Federico Girosi
Richard L. Guerrant
Research22 Nov 2006
Nature

Volume: 444, P: 29-38
Measurement of gut permeability using fluorescent tracer agent technology

Richard B. Dorshow
Carla Hall-Moore
Phillip I. Tarr
ResearchOpen Access07 Sept 2017
Scientific Reports

Volume: 7, P: 1-8
Developmental dynamics of the preterm infant gut microbiota and antibiotic resistome

Antibiotic therapy has varying effects on the species richness of the preterm infant gut microbiota, but can lead to a dominance of multi-drug resistant species and an enrichment of antibiotic resistance genes.

Molly K. Gibson
Bin Wang
Gautam Dantas
Research07 Mar 2016
Nature Microbiology

Volume: 1, P: 1-10

Search

The Neonatal Microbiome and Necrotizing Enterocolitis.

Effect of Crohn's Disease Risk Alleles on Enteric Microbiota Marker Paper

Social and psychological adversity are associated with distinct mother and infant gut microbiome variations

Azithromycin decolonization of STEC—a new risk emerges

Colonic goblet cell-associated antigen passages mediate physiologic and beneficial translocation of live gut bacteria in preweaning mice

Gut microbiome evolution from infancy to 8 years of age

Credible inferences in microbiome research: ensuring rigour, reproducibility and relevance in the era of AI

Azithromycin and decolonization after HUS

Longitudinal gut virome analysis identifies specific viral signatures that precede necrotizing enterocolitis onset in preterm infants

Persistent metagenomic signatures of early-life hospitalization and antibiotic treatment in the infant gut microbiota and resistome

Von Willebrand Factor and Von Willebrand Factor-Cleaving Metalloprotease Activity in Escherichia coli O157:H7-Associated Hemolytic Uremic Syndrome

Infant diet and maternal gestational weight gain predict early metabolic maturation of gut microbiomes

Development of the gut microbiota and mucosal IgA responses in twins and gnotobiotic mice

Early life dynamics of the human gut virome and bacterial microbiome in infants

Reducing stunting among children: the potential contribution of diagnostics

Measurement of gut permeability using fluorescent tracer agent technology

Developmental dynamics of the preterm infant gut microbiota and antibiotic resistome

Search

Quick links

Search

Filter By:

Search

Quick links