Nature Search

Human oral viruses are personal, persistent and gender-consistent

Shira R Abeles
Refugio Robles-Sikisaka
David T Pride
Research20 Mar 2014
The ISME Journal

Volume: 8, P: 1753-1767
Genome-wide association study identifies human genetic variants associated with fatal outcome from Lassa fever

GWAS in difficult-to-recruit populations identifies variants associated with Lassa fever outcome and susceptibility at loci proximal to LIF, GRM7 and LARGE1.

Dylan Kotliar
Siddharth Raju
Pardis C. Sabeti
ResearchOpen Access07 Feb 2024
Nature Microbiology

Volume: 9, P: 751-762
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission

Emerging SARS-CoV-2 variants of concern were detected early and multiple cases of virus spread not captured by clinical genomic surveillance were identified using high-resolution wastewater and clinical sequencing.

Smruthi Karthikeyan
Joshua I. Levy
Rob Knight
ResearchOpen Access07 Jul 2022
Nature

Volume: 609, P: 101-108
Regional connectivity drove bidirectional transmission of SARS-CoV-2 in the Middle East during travel restrictions

The dynamics of SARS-CoV-2 transmission in the Middle East have been relatively under-studied. Here, the authors integrate genomic and travel data and show that introductions to the region were initially driven by intercontinental air travel, after which regional land travel became a more important driver.

Edyth Parker
Catelyn Anderson
Issa Abu-Dayyeh
ResearchOpen Access15 Aug 2022
Nature Communications

Volume: 13, P: 1-14
Genomic epidemiology reveals multiple introductions of Zika virus into the United States

Genome sequencing of Zika virus samples from infected patients and Aedes aegypti mosquitoes in Florida shows that the virus was probably introduced into the United States on multiple occasions, and that the Caribbean is the most likely source.

Nathan D. Grubaugh
Jason T. Ladner
Kristian G. Andersen
Research24 May 2017
Nature

Volume: 546, P: 401-405
Zika virus evolution and spread in the Americas

One hundred and ten Zika virus genomes from ten countries and territories involved in the Zika virus epidemic reveal rapid expansion of the epidemic within Brazil and multiple introductions to other regions.

Hayden C. Metsky
Christian B. Matranga
Pardis C. Sabeti
Research24 May 2017
Nature

Volume: 546, P: 411-415
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

This multiplex PCR enrichment protocol enables sequencing of Zika and other viral genomes of low abundance from clinical samples using the Illumina platform, or the portable MinION sequencer, facilitating direct application in field situations.

Joshua Quick
Nathan D Grubaugh
Nicholas J Loman
Protocols24 May 2017
Nature Protocols

Volume: 12, P: 1261-1276
Association between living environment and human oral viral ecology

Refugio Robles-Sikisaka
Melissa Ly
David T Pride
Research18 Apr 2013
The ISME Journal

Volume: 7, P: 1710-1724

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