Advanced search

Filter By:

Journal Check one or more journals to show results from those journals only.

Choose more journals

Article type Check one or more article types to show results from those article types only.
Subject Check one or more subjects to show results from those subjects only.
Date Choose a date option to show results from those dates only.

Custom date range

Clear all filters
Sort by:
Showing 1–4 of 4 results
Advanced filters: Author: Riccardo Vicedomini Clear advanced filters

  • Existing long-read de novo assembly methods can partially, but not completely, separate strains. Here, the authors develop Strainberry, a metagenome assembly bioinformatic pipeline that exclusively uses longread data to accurately separate and reconstruct strain genomes from single-sample low-complexity microbiomes.

    • Riccardo Vicedomini
    • Christopher Quince
    • Rayan Chikhi
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-14

  • The draft genome of the Norway spruce (P. abies) is presented; this is the first gymnosperm genome to be sequenced and reveals a large genome size (20 Gb) resulting from the accumulation of transposable elements, and comparative sequencing of five other gymnosperm genomes provides insights into conifer genome evolution.

    • Björn Nystedt
    • Nathaniel R. Street
    • Stefan Jansson
    ResearchOpen Access
    Nature
    Volume: 497, P: 579-584

  • This study presents the results of the second round of the Critical Assessment of Metagenome Interpretation challenges (CAMI II), which is a community-driven effort for comprehensively benchmarking tools for metagenomics data analysis.

    • Fernando Meyer
    • Adrian Fritz
    • Alice Carolyn McHardy
    ResearchOpen Access
    Nature Methods
    Volume: 19, P: 429-440

  • Metagenomics describes the analysis of genetic information in a microbial community to provide taxonomic or functional information on the constituent microorganisms. This Primer describes suitable sample types, sampling handling and processing workflows for metagenomics, and gives a detailed discussion of the various analysis techniques to generate meaningful information from metagenomic data.

    • Shaopeng Liu
    • Judith S. Rodriguez
    • Serghei Mangul
    Reviews
    Nature Reviews Methods Primers
    Volume: 5, P: 1-28