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Expanded CD16⁺CD56⁺Granzyme B⁺ NK like CD8⁺ T cells an off target effect of bruton’s tyrosine kinase inhibitors in Waldenström macroglobulinemia

Priyanka Hastak
Chansavath Phetsouphanh
Sarah C. Sasson
ResearchOpen Access05 Oct 2025
Scientific Reports

Volume: 15, P: 1-13
Broadly neutralizing SARS-CoV-2 antibodies through epitope-based selection from convalescent patients

Here, Rouet et al. present a strategy for the identification of broadly neutralising antibodies against SARS-CoV-2 receptor binding domain from peripheral blood mononuclear cells of convalescent patients, which enabled the identification of a new class 6 epitope.

Romain Rouet
Jake Y. Henry
Daniel Christ
ResearchOpen Access08 Feb 2023
Nature Communications

Volume: 14, P: 1-13
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis

Nanopore sequencing (ONT) has been used in SARS-CoV-2 studies, however adoption of ONT for SARS-CoV-2 surveillance has been limited due to common concerns around sequencing accuracy. Here, the authors perform a comprehensive evaluation of ONT analytical performance on 157 matched SARS-CoV-2-positive patient specimens and synthetic RNA controls.

Rowena A. Bull
Thiruni N. Adikari
Ira W. Deveson
ResearchOpen Access09 Dec 2020
Nature Communications

Volume: 11, P: 1-8
Parameters for one health genomic surveillance of Escherichia coli from Australia

Methods to demonstrate genomic linkages between pathogens across One Health compartments have not been established. Here, the authors compile a collection of E coli genomes from humans, animals, and the environment in Australia and investigate genomic evidence of cross-source clusters.

Anne E. Watt
Max L. Cummins
Benjamin P. Howden
ResearchOpen Access02 Jan 2025
Nature Communications

Volume: 16, P: 1-14
Development and verification of a novel tiling PCR method for long-range HIV-1 sequencing in a diagnostic setting

Bethany A. Horsburgh
Arunasingam Abayasingam
Rebecca Stephenson
ResearchOpen Access01 Jul 2025
Scientific Reports

Volume: 15, P: 1-10
Identification of human progenitors of exhausted CD8⁺ T cells associated with elevated IFN-γ response in early phase of viral infection

The early immune response following exposure to HCV is not fully explored. Here the authors use single cell analysis and immune profiling to relate the infection sequence and immune response to early HCV infection showing that exhausted phenotypes of T cells arise early post infection.

Curtis Cai
Jerome Samir
Fabio Luciani
ResearchOpen Access07 Dec 2022
Nature Communications

Volume: 13, P: 1-16
Higher abundance of enterovirus A species in the gut of children with islet autoimmunity

Ki Wook Kim
Jessica L. Horton
Maria E. Craig
ResearchOpen Access11 Feb 2019
Scientific Reports

Volume: 9, P: 1-8
Dynamic evolution of hepatitis C virus resistance-associated substitutions in the absence of antiviral treatment

Auda A. Eltahla
Preston Leung
Rowena A. Bull
ResearchOpen Access31 Jan 2017
Scientific Reports

Volume: 7, P: 1-6
Publisher Correction: Parameters for one health genomic surveillance of Escherichia coli from Australia

Anne E. Watt
Max L. Cummins
Benjamin P. Howden
Amendments and CorrectionsOpen Access07 Apr 2025
Nature Communications

Volume: 16, P: 1
Clonally diverse CD38⁺HLA-DR⁺CD8⁺ T cells persist during fatal H7N9 disease

Virus-specific CD8⁺ T cells are crucial during H7N9 influenza infection, but CD8⁺ T cell dysfunction is associated with poor prognosis. Here, the authors use molecular and phenotypic analysis to establish persistence of clonally diverse CD8⁺ T cell populations during fatal infection.

Zhongfang Wang
Lingyan Zhu
Katherine Kedzierska
ResearchOpen Access26 Feb 2018
Nature Communications

Volume: 9, P: 1-12
Proportion and risk factors for death by euthanasia in dogs in the UK

Camilla Pegram
Carol Gray
Dan G. O’Neill
ResearchOpen Access04 May 2021
Scientific Reports

Volume: 11, P: 1-12
Clearance of hepatitis C virus is associated with early and potent but narrowly-directed, Envelope-specific antibodies

Melanie R. Walker
Preston Leung
Rowena A. Bull
ResearchOpen Access16 Sept 2019
Scientific Reports

Volume: 9, P: 1-14
Single molecule, near full-length genome sequencing of dengue virus

Thiruni N. Adikari
Nasir Riaz
Chaturaka Rodrigo
ResearchOpen Access23 Oct 2020
Scientific Reports

Volume: 10, P: 1-12
Conserved epitopes with high HLA-I population coverage are targets of CD8⁺ T cells associated with high IFN-γ responses against all dengue virus serotypes

Thiruni N. Adikari
Francesca Di Giallonardo
Fabio Luciani
ResearchOpen Access24 Nov 2020
Scientific Reports

Volume: 10, P: 1-12
Respiratory viral co-infections among SARS-CoV-2 cases confirmed by virome capture sequencing

Ki Wook Kim
Ira W. Deveson
William D. Rawlinson
ResearchOpen Access16 Feb 2021
Scientific Reports

Volume: 11, P: 1-9
Amplification and next generation sequencing of near full-length human enteroviruses for identification and characterisation from clinical samples

Sonia R. Isaacs
Ki Wook Kim
Maria E. Craig
ResearchOpen Access08 Aug 2018
Scientific Reports

Volume: 8, P: 1-9
Impact of sequencing depth and read length on single cell RNA sequencing data of T cells

Simone Rizzetto
Auda A. Eltahla
Fabio Luciani
ResearchOpen Access06 Oct 2017
Scientific Reports

Volume: 7, P: 1-11

Search

Expanded CD16⁺CD56⁺Granzyme B⁺ NK like CD8⁺ T cells an off target effect of bruton’s tyrosine kinase inhibitors in Waldenström macroglobulinemia

Broadly neutralizing SARS-CoV-2 antibodies through epitope-based selection from convalescent patients

Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis

Parameters for one health genomic surveillance of Escherichia coli from Australia

Development and verification of a novel tiling PCR method for long-range HIV-1 sequencing in a diagnostic setting

Identification of human progenitors of exhausted CD8⁺ T cells associated with elevated IFN-γ response in early phase of viral infection

Higher abundance of enterovirus A species in the gut of children with islet autoimmunity

Dynamic evolution of hepatitis C virus resistance-associated substitutions in the absence of antiviral treatment

Publisher Correction: Parameters for one health genomic surveillance of Escherichia coli from Australia

Clonally diverse CD38⁺HLA-DR⁺CD8⁺ T cells persist during fatal H7N9 disease

Proportion and risk factors for death by euthanasia in dogs in the UK

Clearance of hepatitis C virus is associated with early and potent but narrowly-directed, Envelope-specific antibodies

Single molecule, near full-length genome sequencing of dengue virus

Conserved epitopes with high HLA-I population coverage are targets of CD8⁺ T cells associated with high IFN-γ responses against all dengue virus serotypes

Respiratory viral co-infections among SARS-CoV-2 cases confirmed by virome capture sequencing

Amplification and next generation sequencing of near full-length human enteroviruses for identification and characterisation from clinical samples

Impact of sequencing depth and read length on single cell RNA sequencing data of T cells

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